Comparing diversity of fungi from living leaves using culturing and high-throughput environmental sequencing

Communities of fungal endophytes in leaves of Fraxinus ornus are highly diverse

(2017) Mohammed Ibrahim et al.   Fungal Ecology

Indexed PCR Primers Induce Template-Specific Bias in Large-Scale DNA Sequencing Studies

(2016) James L. O’Donnell et al.   PLoS One

Relic DNA is abundant in soil and obscures estimates of soil microbial diversity

(2016) Paul Carini et al.   Nature Microbiology

A comparison of the community diversity of foliar fungal endophytes between seedling and adult loblolly pines ( Pinus taeda )

(2015) Ryoko Oono et al.   Fungal Biology

Fungal Endophytes in Aboveground Tissues of Desert Plants: Infrequent in Culture, but Highly Diverse and Distinctive Symbionts

(2015) Nicholas C. Massimo et al.   MICROBIAL ECOLOGY

Insights into the genus Diaporthe: phylogenetic species delimitation in the D. eres species complex

(2014) Dhanushka Udayanga et al.   FUNGAL DIVERSITY

Sequence Depth, Not PCR Replication, Improves Ecological Inference from Next Generation DNA Sequencing

(2014) Dylan P. Smith et al.   PLoS One

Leaf and Root-Associated Fungal Assemblages Do Not Follow Similar Elevational Diversity Patterns

(2014) Aurore Coince et al.   PLoS One

Leaf-inhabiting endophytic fungi of European Beech (Fagus sylvatica L.) co-occur in leaf litter but are rare on decaying wood of the same host

(2013) Martin Unterseher et al.   FUNGAL DIVERSITY

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

Fungal community analysis by high-throughput sequencing of amplified markers - a user's guide

(2013) Björn D. Lindahl et al.   NEW PHYTOLOGIST

Ion Torrent PGM as Tool for Fungal Community Analysis: A Case Study of Endophytes in Eucalyptus grandis Reveals High Taxonomic Diversity

(2013) Martin Kemler et al.   PLoS One

Revised circumscription of Nothofagus and recognition of the segregate genera Fuscospora, Lophozonia, and Trisyngyne (Nothofagaceae)

(2013) PETER B. HEENAN et al.   Phytotaxa

Patterns of fungal diversity in New Zealand Nothofagus forests

(2012) Peter R. Johnston et al.   Fungal Biology

Spatial variability of phyllosphere fungal assemblages: genetic distance predominates over geographic distance in a European beech stand (Fagus sylvatica)

(2012) Tristan Cordier et al.   Fungal Ecology

Characterisation of seven polymorphic microsatellites forNothofagussubgenusFuscosporafrom New Zealand

(2012) RD Smissen et al.   NEW ZEALAND JOURNAL OF BOTANY

The Colletotrichum gloeosporioides species complex

(2012) B.S. Weir et al.   STUDIES IN MYCOLOGY

Intragenomic variation in the ITS rDNA region obscures phylogenetic relationships and inflates estimates of operational taxonomic units in genus Laetiporus

(2011) Daniel L. Lindner et al.   MYCOLOGIA

Towards standardization of the description and publication of next-generation sequencing datasets of fungal communities

(2011) R. Henrik Nilsson et al.   NEW PHYTOLOGIST

ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases

(2010) Eva Bellemain et al.   BMC MICROBIOLOGY

454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases

(2010) Leho Tedersoo et al.   NEW PHYTOLOGIST

Massively parallel 454 sequencing indicates hyperdiverse fungal communities in temperateQuercus macrocarpaphyllosphere

(2009) A. Jumpponen et al.   NEW PHYTOLOGIST