Combined strategy employing MutMap and RNA-seq reveals genomic regions and genes associated with complete panicle exsertion in rice
出版年份 2023 全文链接
标题
Combined strategy employing MutMap and RNA-seq reveals genomic regions and genes associated with complete panicle exsertion in rice
作者
关键词
-
出版物
MOLECULAR BREEDING
Volume 43, Issue 9, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2023-08-22
DOI
10.1007/s11032-023-01412-1
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- High-performance pipeline for MutMap and QTL-seq
- (2022) Yu Sugihara et al. PeerJ
- Down regulation of transcripts involved in selective metabolic pathways as an acclimation strategy in nitrogen use efficient genotypes of rice under low nitrogen
- (2021) C. N. Neeraja et al. 3 Biotech
- Transcriptome analysis of rice response to blast fungus identified core genes involved in immunity
- (2021) Dewei Yang et al. PLANT CELL AND ENVIRONMENT
- RNA-Seq-Based Profiling of pl Mutant Reveals Transcriptional Regulation of Anthocyanin Biosynthesis in Rice (Oryza sativa L.)
- (2021) Ruonan Xu et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- RNA-Seq based global transcriptome analysis of rice unravels the key players associated with brown planthopper resistance
- (2021) Vanisri Satturu et al. INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES
- Mutation resource of Samba Mahsuri revealed the presence of high extent of variations among key traits for rice improvement
- (2021) Gopi Potupureddi et al. PLoS One
- Differential Expression of Genes at Panicle Initiation and Grain Filling Stages Implied in Heterosis of Rice Hybrids
- (2020) Jawahar Lal Katara et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Transcriptome Analysis of Early Defenses in Rice against Fusarium fujikuroi
- (2020) An-Po Cheng et al. Rice
- Genome Wide Analysis of the Transcriptional Profiles in Different Regions of the Developing Rice Grains
- (2020) Ting-Ying Wu et al. Rice
- Comparative transcriptome analysis of two rice genotypes differing in their tolerance to saline-alkaline stress
- (2020) Qian Li et al. PLoS One
- Gene Expression Dynamics in Rice Peduncles at the Heading Stage
- (2020) Manu Kandpal et al. Frontiers in Genetics
- Gene identification and transcriptome analysis of low cadmium accumulation rice mutant (lcd1) in response to cadmium stress using MutMap and RNA-seq
- (2019) Zhen Zhen Cao et al. BMC PLANT BIOLOGY
- Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype
- (2019) Daehwan Kim et al. NATURE BIOTECHNOLOGY
- Genome-wide association analysis of panicle exsertion and uppermost internode in rice (Oryza sativa L.)
- (2019) Chengfang Zhan et al. Rice
- OUP accepted manuscript
- (2018) BIOINFORMATICS
- Characterization and fine mapping of qPE12, a new locus controlling rice panicle exsertion
- (2018) Chunfang Zhao et al. EUPHYTICA
- Transcriptome analysis of near-isogenic line provides novel insights into genes associated with panicle traits regulation in rice
- (2018) Wuhan Zhang et al. PLoS One
- WB1, a Regulator of Endosperm Development in Rice, Is Identified by a Modified MutMap Method
- (2018) Hong Wang et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- The RNA-seq transcriptome analysis identified genes related to rice seed dormancy
- (2018) K. Xie et al. BIOLOGIA PLANTARUM
- 08SG2/OsBAK1 regulates grain size and number, and functions differently in Indica and Japonica backgrounds in rice
- (2017) Hua Yuan et al. Rice
- Sequencing and de novo assembly of a near complete indica rice genome
- (2017) Huilong Du et al. Nature Communications
- RNA-Seq Analysis of Diverse Rice Genotypes to Identify the Genes Controlling Coleoptile Growth during Submerged Germination
- (2017) Sheng-Kai Hsu et al. Frontiers in Plant Science
- Favorable Marker Alleles for Panicle Exsertion Length in Rice (Oryza sativa L.) Mined by Association Mapping and the RSTEP-LRT Method
- (2017) Xiaojing Dang et al. Frontiers in Plant Science
- Analysis of QTLs for panicle exsertion and its relationship with yield and yield-related traits in rice (Oryza sativa L.)
- (2016) C.F. Zhao et al. GENETICS AND MOLECULAR RESEARCH
- MutMap accelerates breeding of a salt-tolerant rice cultivar
- (2015) Hiroki Takagi et al. NATURE BIOTECHNOLOGY
- Data quality aware analysis of differential expression in RNA-seq with NOISeq R/Bioc package
- (2015) Sonia Tarazona et al. NUCLEIC ACIDS RESEARCH
- featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
- (2013) Y. Liao et al. BIOINFORMATICS
- Genome sequencing reveals agronomically important loci in rice using MutMap
- (2012) Akira Abe et al. NATURE BIOTECHNOLOGY
- clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters
- (2012) Guangchuang Yu et al. OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY
- Transcriptomic Analysis of Rice (Oryza sativa) Developing Embryos Using the RNA-Seq Technique
- (2012) Hong Xu et al. PLoS One
- Genetic Analysis and Mapping of an Enclosed Panicle Mutant Locus esp1 in Rice (Oryza sativa L.)
- (2012) Yuan-lin DUAN et al. Journal of Integrative Agriculture
- Rice Ethylene-Response AP2/ERF Factor OsEATB Restricts Internode Elongation by Down-Regulating a Gibberellin Biosynthetic Gene
- (2011) Weiwei Qi et al. PLANT PHYSIOLOGY
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- Inheritance of pinacle exsertion in rice
- (2008) Renata Pereira da Cruz et al. SCIENTIA AGRICOLA
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now