MutMap accelerates breeding of a salt-tolerant rice cultivar

QTL-seq: rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations

(2013) Hiroki Takagi et al.   PLANT JOURNAL

Coval: Improving Alignment Quality and Variant Calling Accuracy for Next-Generation Sequencing Data

(2013) Shunichi Kosugi et al.   PLoS One

Genome sequencing reveals agronomically important loci in rice using MutMap

(2012) Akira Abe et al.   NATURE BIOTECHNOLOGY

Characterization of Genes Involved in Cytokinin Signaling and Metabolism from Rice

(2012) Y.-C. Tsai et al.   PLANT PHYSIOLOGY

Environmental impact assessment of the 2011 Tohoku-oki tsunami on the Sendai Plain

(2012) Catherine Chagué-Goff et al.   SEDIMENTARY GEOLOGY

Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms

(2010) Toshio Yamamoto et al.   BMC GENOMICS

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Mechanisms of Salinity Tolerance

(2008) Rana Munns et al.   Annual Review of Plant Biology

Type B Response Regulators of Arabidopsis Play Key Roles in Cytokinin Signaling and Plant Development

(2008) R. D. Argyros et al.   PLANT CELL