Northern glacial refugia and altitudinal niche divergence shape genome-wide differentiation in the emerging plant modelArabidopsis arenosa

Too early and too northerly: evidence of temperate trees in northern Central Europe during the Younger Dryas

(2016) Vincent Robin et al.   NEW PHYTOLOGIST

Recent similarity in distribution ranges does not mean a similar postglacial history: a phylogeographical study of the boreal tree speciesAlnus incanabased on microsatellite and chloroplast DNA variation

(2016) Bohumil Mandák et al.   NEW PHYTOLOGIST

Habitat-Associated Life History and Stress-Tolerance Variation inArabidopsis arenosa

(2016) Pierre Baduel et al.   PLANT PHYSIOLOGY

Ecological segregation does not drive the intricate parapatric distribution of diploid and tetraploid cytotypes of theArabidopsis arenosagroup (Brassicaceae)

(2015) Filip Kolář et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

The crested newtTriturus cristatusrecolonized temperate Eurasia from an extra-Mediterranean glacial refugium

(2015) Ben Wielstra et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Comparative phylogeography of land snail species in mountain refugia in the European Southern Alps

(2015) Kathrin-Lisa Nägele et al.   JOURNAL OF BIOGEOGRAPHY

Single Geographic Origin of a Widespread Autotetraploid Arabidopsis arenosa Lineage Followed by Interploidy Admixture

(2015) Brian Arnold et al.   MOLECULAR BIOLOGY AND EVOLUTION

Higher genetic diversity in recolonized areas than in refugia ofAlnus glutinosatriggered by continent-wide lineage admixture

(2015) Alena Havrdová et al.   MOLECULAR ECOLOGY

The origin of unique diversity in deglaciated areas: traces of Pleistocene processes in north-European endemics from theGalium pusillumpolyploid complex (Rubiaceae)

(2015) Filip Kolář et al.   MOLECULAR ECOLOGY

Methods and models for unravelling human evolutionary history

(2015) Joshua G. Schraiber et al.   NATURE REVIEWS GENETICS

How many taxa? Spatiotemporal evolution and taxonomy of Amphoricarpos (Asteraceae, Carduoideae) on the Balkan Peninsula

(2015) Danka Caković et al.   ORGANISMS DIVERSITY & EVOLUTION

A Genome Scan for Genes Underlying Microgeographic-Scale Local Adaptation in a Wild Arabidopsis Species

(2015) Shosei Kubota et al.   PLoS Genetics

DIYABC v2.0: a software to make approximate Bayesian computation inferences about population history using single nucleotide polymorphism, DNA sequence and microsatellite data

(2014) Jean-Marie Cornuet et al.   BIOINFORMATICS

Taming the wild: resolving the gene pools of non-model Arabidopsislineages

(2014) Nora Hohmann et al.   BMC EVOLUTIONARY BIOLOGY

Selection on Meiosis Genes in Diploid and Tetraploid Arabidopsis arenosa

(2014) Kevin M. Wright et al.   MOLECULAR BIOLOGY AND EVOLUTION

Escaping to the summits: Phylogeography and predicted range dynamics of Cerastium dinaricum, an endangered high mountain plant endemic to the western Balkan Peninsula

(2014) Denis Kutnjak et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Patterns and processes in plant phylogeography in the Mediterranean Basin. A review

(2014) Gonzalo Nieto Feliner   PERSPECTIVES IN PLANT ECOLOGY EVOLUTION AND SYSTEMATICS

MorphoTools: a set of R functions for morphometric analysis

(2014) Petr Koutecký   PLANT SYSTEMATICS AND EVOLUTION

Migration Patterns of Subgenus Alnus in Europe since the Last Glacial Maximum: A Systematic Review

(2014) Jan Douda et al.   PLoS One

Direct evidence of central European forest refugia during the last glacial period based on mollusc fossils

(2014) Lucie Juřičková et al.   QUATERNARY RESEARCH

The evolution of substrate differentiation in Minuartia series Laricifoliae (Caryophyllaceae) in the European Alps: In situ origin or repeated colonization?

(2013) Abigail J. Moore et al.   AMERICAN JOURNAL OF BOTANY

The phylogeny of the European high mountain genus Adenostyles (Asteraceae-Senecioneae) reveals that edaphic shifts coincide with dispersal events

(2013) Markus S. Dillenberger et al.   AMERICAN JOURNAL OF BOTANY

Meiotic Adaptation to Genome Duplication in Arabidopsis arenosa

(2013) Levi Yant et al.   CURRENT BIOLOGY

Investigating Incipient Speciation in Arabidopsis lyrata from Patterns of Transmission Ratio Distortion

(2013) J. Leppala et al.   GENETICS

No evidence for nuclear introgression despite complete mtDNA replacement in the Carpathian newt (Lissotriton montandoni)

(2013) P. Zieliński et al.   MOLECULAR ECOLOGY

Population genomic footprints of selection and associations with climate in natural populations ofArabidopsis hallerifrom the Alps

(2013) Martin C. Fischer et al.   MOLECULAR ECOLOGY

Genetic roadmap of the Arctic: plant dispersal highways, traffic barriers and capitals of diversity

(2013) Pernille Bronken Eidesen et al.   NEW PHYTOLOGIST

Cryptic or mystic? Glacial tree refugia in northern Europe

(2013) P.C. Tzedakis et al.   TRENDS IN ECOLOGY & EVOLUTION

Extra-Mediterranean refugia: The rule and not the exception?

(2012) Thomas Schmitt et al.   Frontiers in Zoology

Highest genetic diversity at the northern range limit of the rare orchid Isotria medeoloides

(2012) J L Stone et al.   HEREDITY

Inferring Species Trees Directly from Biallelic Genetic Markers: Bypassing Gene Trees in a Full Coalescent Analysis

(2012) David Bryant et al.   MOLECULAR BIOLOGY AND EVOLUTION

Tales of the unexpected: Phylogeography of the arctic-alpine model plantSaxifraga oppositifolia(Saxifragaceae) revisited

(2012) MANUELA WINKLER et al.   MOLECULAR ECOLOGY

Estimation of demo-genetic model probabilities with Approximate Bayesian Computation using linear discriminant analysis on summary statistics

(2012) ARNAUD ESTOUP et al.   Molecular Ecology Resources

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

The Evolutionary History of the Arabidopsis arenosa Complex: Diverse Tetraploids Mask the Western Carpathian Center of Species and Genetic Diversity

(2012) Roswitha Schmickl et al.   PLoS One

Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

(2012) Joseph K. Pickrell et al.   PLoS Genetics

Genetic Adaptation Associated with Genome-Doubling in Autotetraploid Arabidopsis arenosa

(2012) Jesse D. Hollister et al.   PLoS Genetics

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Mosaic variation in allozyme and plastid DNA markers in the European ranges of Silene vulgaris and its partially sympatric relative S. uniflora (Caryophyllaceae)

(2011) HONOR C. PRENTICE et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Refugia: identifying and understanding safe havens for biodiversity under climate change

(2011) Gunnar Keppel et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Quaternary range dynamics of ecologically divergent species (Edraianthus serpyllifolius and E. tenuifolius, Campanulaceae) within the Balkan refugium

(2011) Boštjan Surina et al.   JOURNAL OF BIOGEOGRAPHY

Nuclear and mitochondrial phylogeography of the European fire-bellied toads Bombina bombina and Bombina variegata supports their independent histories

(2011) ANNA FIJARCZYK et al.   MOLECULAR ECOLOGY

Plant molecular phylogeography in China and adjacent regions: Tracing the genetic imprints of Quaternary climate and environmental change in the world’s most diverse temperate flora

(2011) Ying-Xiong Qiu et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The Arabidopsis lyrata genome sequence and the basis of rapid genome size change

(2011) Tina T Hu et al.   NATURE GENETICS

Genotype and SNP calling from next-generation sequencing data

(2011) Rasmus Nielsen et al.   NATURE REVIEWS GENETICS

Altitudinal and Climatic Adaptation Is Mediated by Flowering Traits and FRI, FLC, and PHYC Genes in Arabidopsis

(2011) B. Mendez-Vigo et al.   PLANT PHYSIOLOGY

Arabidopsis hybrid speciation processes

(2011) R. Schmickl et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Approximate Bayesian Computation in Evolution and Ecology

(2010) Mark A. Beaumont   Annual Review of Ecology Evolution and Systematics

pegas: an R package for population genetics with an integrated-modular approach

(2010) E. Paradis   BIOINFORMATICS

Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads

(2010) G. Lunter et al.   GENOME RESEARCH

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Break zones in the distributions of alleles and species in alpine plants

(2010) Conny Thiel-Egenter et al.   JOURNAL OF BIOGEOGRAPHY

Population resequencing reveals local adaptation of Arabidopsis lyrata to serpentine soils

(2010) Thomas L Turner et al.   NATURE GENETICS

The Rate and Molecular Spectrum of Spontaneous Mutations in Arabidopsis thaliana

(2010) S. Ossowski et al.   SCIENCE

History or ecology? Substrate type as a major driver of patial genetic structure in Alpine plants

(2009) Nadir Alvarez et al.   ECOLOGY LETTERS

The allopolyploidArabidopsis kamchaticaoriginated from multiple individuals ofArabidopsis lyrataandArabidopsis halleri

(2009) RIE SHIMIZU-INATSUGI et al.   MOLECULAR ECOLOGY

Alpines, trees, and refugia in Europe

(2009) H. John B. Birks et al.   Plant Ecology & Diversity

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

Simultaneous Estimation of Null Alleles and Inbreeding Coefficients

(2008) Igor J. Chybicki et al.   JOURNAL OF HEREDITY

High genetic differentiation in the alpine plantCampanula alpinaJacq. (Campanulaceae): evidence for glacial survival in several Carpathian regions and long-term isolation between the Carpathians and the Alps

(2008) M. RONIKIER et al.   MOLECULAR ECOLOGY

Historical divergence vs. contemporary gene flow: evolutionary history of the calcicoleRanunculus alpestrisgroup (Ranunculaceae) in the European Alps and the Carpathians

(2008) O. PAUN et al.   MOLECULAR ECOLOGY

Genetic consequences of glacial survival and postglacial colonization in Norway spruce: combined analysis of mitochondrial DNA and fossil pollen

(2008) MARI METTE TOLLEFSRUD et al.   MOLECULAR ECOLOGY

Phylogeographic insights into cryptic glacial refugia

(2008) J PROVAN et al.   TRENDS IN ECOLOGY & EVOLUTION