Characterization of the Poplar Pan-Genome by Genome-Wide Identification of Structural Variation
出版年份 2016 全文链接
标题
Characterization of the Poplar Pan-Genome by Genome-Wide Identification of Structural Variation
作者
关键词
-
出版物
MOLECULAR BIOLOGY AND EVOLUTION
Volume 33, Issue 10, Pages 2706-2719
出版商
Oxford University Press (OUP)
发表日期
2016-08-08
DOI
10.1093/molbev/msw161
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- New resources for genetic studies inPopulus nigra: genome-wide SNP discovery and development of a 12k Infinium array
- (2016) P. Faivre-Rampant et al. Molecular Ecology Resources
- Transposon Insertions, Structural Variations, and SNPs Contribute to the Evolution of the Melon Genome
- (2015) Walter Sanseverino et al. MOLECULAR BIOLOGY AND EVOLUTION
- Genome-Wide Mapping of Structural Variations Reveals a Copy Number Variant That Determines Reproductive Morphology in Cucumber
- (2015) Zhonghua Zhang et al. PLANT CELL
- The Contributions of Transposable Elements to the Structure, Function, and Evolution of Plant Genomes
- (2014) Jeffrey L. Bennetzen et al. Annual Review of Plant Biology
- HTSeq--a Python framework to work with high-throughput sequencing data
- (2014) S. Anders et al. BIOINFORMATICS
- Structural variations in plant genomes
- (2014) R. K. Saxena et al. Briefings in Functional Genomics
- Structural variation and genome complexity: is dispensable really dispensable?
- (2014) Fabio Marroni et al. CURRENT OPINION IN PLANT BIOLOGY
- De novo assembly of soybean wild relatives for pan-genome analysis of diversity and agronomic traits
- (2014) Ying-hui Li et al. NATURE BIOTECHNOLOGY
- Presence–Absence Variation in A. thaliana Is Primarily Associated with Genomic Signatures Consistent with Relaxed Selective Constraints
- (2013) Stephen J. Bush et al. MOLECULAR BIOLOGY AND EVOLUTION
- Aluminum tolerance in maize is associated with higher MATE1 gene copy number
- (2013) L. G. Maron et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Copy number polymorphism in plant genomes
- (2013) Agnieszka Żmieńko et al. THEORETICAL AND APPLIED GENETICS
- TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
- (2013) Daehwan Kim et al. GENOME BIOLOGY
- DELLY: structural variant discovery by integrated paired-end and split-read analysis
- (2012) T. Rausch et al. BIOINFORMATICS
- Maize HapMap2 identifies extant variation from a genome in flux
- (2012) Jer-Ming Chia et al. NATURE GENETICS
- Retrotransposons Control Fruit-Specific, Cold-Dependent Accumulation of Anthocyanins in Blood Oranges
- (2012) E. Butelli et al. PLANT CELL
- Structural Variants in the Soybean Genome Localize to Clusters of Biotic Stress-Response Genes
- (2012) L. K. McHale et al. PLANT PHYSIOLOGY
- A fast, lock-free approach for efficient parallel counting of occurrences of k-mers
- (2011) Guillaume Marçais et al. BIOINFORMATICS
- Reading TE leaves: New approaches to the identification of transposable element insertions
- (2011) D. A. Ray et al. GENOME RESEARCH
- Analysis of Arabidopsis genome-wide variations before and after meiosis and meiotic recombination by resequencing Landsberg erecta and all four products of a single meiosis
- (2011) P. Lu et al. GENOME RESEARCH
- Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes
- (2011) Xun Xu et al. NATURE BIOTECHNOLOGY
- Genome structural variation discovery and genotyping
- (2011) Can Alkan et al. NATURE REVIEWS GENETICS
- Large-scale detection of rare variants via pooled multiplexed next-generation sequencing: towards next-generation Ecotilling
- (2011) Fabio Marroni et al. PLANT JOURNAL
- Considering Transposable Element Diversification in De Novo Annotation Approaches
- (2011) Timothée Flutre et al. PLoS One
- A computational study of the dynamics of LTR retrotransposons in the Populus trichocarpa genome
- (2011) Rosa Maria Cossu et al. Tree Genetics & Genomes
- Genome-wide patterns of genetic variation in sweet and grain sorghum (Sorghum bicolor)
- (2011) Lei-Ying Zheng et al. GENOME BIOLOGY
- Genome-wide patterns of genetic variation among elite maize inbred lines
- (2010) Jinsheng Lai et al. NATURE GENETICS
- Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection
- (2010) Hon-Ming Lam et al. NATURE GENETICS
- Missing heritability in genome-wide association study research
- (2010) Paolo Vineis et al. NATURE REVIEWS GENETICS
- Missing heritability and strategies for finding the underlying causes of complex disease
- (2010) Evan E. Eichler et al. NATURE REVIEWS GENETICS
- Bud set in poplar - genetic dissection of a complex trait in natural and hybrid populations
- (2010) Antje Rohde et al. NEW PHYTOLOGIST
- Rice structural variation: a comparative analysis of structural variation between rice and three of its closest relatives in the genus Oryza
- (2010) Bonnie L. Hurwitz et al. PLANT JOURNAL
- Differential expression analysis for sequence count data
- (2010) Simon Anders et al. GENOME BIOLOGY
- A geometric approach for classification and comparison of structural variants
- (2009) S. Sindi et al. BIOINFORMATICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- Human subtelomeric copy number variations
- (2009) H. Riethman CYTOGENETIC AND GENOME RESEARCH
- Finding the missing heritability of complex diseases
- (2009) Teri A. Manolio et al. NATURE
- Distribution, diversity, evolution, and survival of Helitrons in the maize genome
- (2009) L. Yang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Gene amplification confers glyphosate resistance in Amaranthus palmeri
- (2009) T. A. Gaines et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- LTR retrotransposons reveal recent extensive inter-subspecies nonreciprocal recombination in Asian cultivated rice
- (2008) Hao Wang et al. BMC GENOMICS
- Genome-wide identification of NBS resistance genes in Populus trichocarpa
- (2008) Annegret Kohler et al. PLANT MOLECULAR BIOLOGY
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now