Conserved but Attenuated Parental Gene Expression in Allopolyploids: Constitutive Zinc Hyperaccumulation in the AllotetraploidArabidopsis kamchatica

Plant adaptive radiation mediated by polyploid plasticity in transcriptomes

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Cold tolerance in Arabidopsis kamchatica

(2015) Jessica J. Armstrong et al.   AMERICAN JOURNAL OF BOTANY

The effect of polyploidy and hybridization on the evolution of floral colour inNicotiana(Solanaceae)

(2015) Elizabeth W. McCarthy et al.   ANNALS OF BOTANY

Evolution of Selfing: Recurrent Patterns in Molecular Adaptation

(2015) Kentaro K. Shimizu et al.   Annual Review of Ecology Evolution and Systematics

The Greater Phenotypic Homeostasis of the AllopolyploidCoffea arabicaImproved the Transcriptional Homeostasis Over that of Both Diploid Parents

(2015) Benoît Bertrand et al.   PLANT AND CELL PHYSIOLOGY

Nonadditive Gene Expression in Polyploids

(2014) Mi-Jeong Yoo et al.   Annual Review of Genetics

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Polyploidy in the Arabidopsis genus

(2014) Kirsten Bomblies et al.   CHROMOSOME RESEARCH

Zinc and cadmium hyperaccumulation act as deterrents towards specialist herbivores and impede the performance of a generalist herbivore

(2014) Ardeshir Kazemi-Dinan et al.   NEW PHYTOLOGIST

Genome-wide quantification of homeolog expression ratio revealed nonstochastic gene regulation in synthetic allopolyploid Arabidopsis

(2014) Satoru Akama et al.   NUCLEIC ACIDS RESEARCH

The legacy of diploid progenitors in allopolyploid gene expression patterns

(2014) R. J. A. Buggs et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Genomic and epigenetic insights into the molecular bases of heterosis

(2013) Z. Jeffrey Chen   NATURE REVIEWS GENETICS

Plant Defensin type 1(PDF1): protein promiscuity and expression variation within theArabidopsisgenus shed light on zinc tolerance acquisition inArabidopsis halleri

(2013) Zaigham Shahzad et al.   NEW PHYTOLOGIST

Contribution of subgenomes to the transcriptome and their intertwined regulation in the allopolyploidCoffea arabicagrown at contrasted temperatures

(2013) Marie-Christine Combes et al.   NEW PHYTOLOGIST

Hard Selective Sweep and Ectopic Gene Conversion in a Gene Cluster Affording Environmental Adaptation

(2013) Marc Hanikenne et al.   PLoS Genetics

A more complete picture of metal hyperaccumulation through next-generation sequencing technologies

(2013) Nathalie Verbruggen et al.   Frontiers in Plant Science

Next-generation sequencing and genome evolution in allopolyploids

(2012) Richard J. A. Buggs et al.   AMERICAN JOURNAL OF BOTANY

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Homoeolog expression bias and expression level dominance in allopolyploid cotton

(2012) M-J Yoo et al.   HEREDITY

Genome-wide Analysis of Cis-regulatory Divergence between Species in the Arabidopsis Genus

(2012) Fei He et al.   MOLECULAR BIOLOGY AND EVOLUTION

Cis- and trans-regulatory divergence between progenitor species determines gene-expression novelty in Arabidopsis allopolyploids

(2012) Xiaoli Shi et al.   Nature Communications

Recent Loss of Self-Incompatibility by Degradation of the Male Component in Allotetraploid Arabidopsis kamchatica

(2012) Takashi Tsuchimatsu et al.   PLoS Genetics

The more the better? The role of polyploidy in facilitating plant invasions

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The Arabidopsis lyrata genome sequence and the basis of rapid genome size change

(2011) Tina T Hu et al.   NATURE GENETICS

Differential expression and regulation of iron-regulated metal transporters in Arabidopsis halleri and Arabidopsis thaliana - the role in zinc tolerance

(2011) Varanavasiappan Shanmugam et al.   NEW PHYTOLOGIST

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

(2011) Philippe Lamesch et al.   NUCLEIC ACIDS RESEARCH

Tandem Quadruplication of HMA4 in the Zinc (Zn) and Cadmium (Cd) Hyperaccumulator Noccaea caerulescens

(2011) Seosamh Ó Lochlainn et al.   PLoS One

Does Speciation between Arabidopsis halleri and Arabidopsis lyrata Coincide with Major Changes in a Molecular Target of Adaptation?

(2011) Camille Roux et al.   PLoS One

Metal Hyperaccumulation in Plants

(2010) Ute Krämer   Annual Review of Plant Biology

The evolutionary history of the Arabidopsis lyrata complex: a hybrid in the amphi-Beringian area closes a large distribution gap and builds up a genetic barrier

(2010) Roswitha Schmickl et al.   BMC EVOLUTIONARY BIOLOGY

Homoeolog-specific transcriptional bias in allopolyploid wheat

(2010) Alina R Akhunova et al.   BMC GENOMICS

Zinc tolerance and uptake by Arabidopsis halleri ssp. gemmifera grown in nutrient solution

(2010) Md. Abul Kashem et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Evolution of self-compatibility in Arabidopsis by a mutation in the male specificity gene

(2010) Takashi Tsuchimatsu et al.   NATURE

agriGO: a GO analysis toolkit for the agricultural community

(2010) Zhou Du et al.   NUCLEIC ACIDS RESEARCH

The Rate and Molecular Spectrum of Spontaneous Mutations in Arabidopsis thaliana

(2010) S. Ossowski et al.   SCIENCE

The Five AhMTP1 Zinc Transporters Undergo Different Evolutionary Fates towards Adaptive Evolution to Zinc Tolerance in Arabidopsis halleri

(2010) Zaigham Shahzad et al.   PLoS Genetics

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

The allopolyploidArabidopsis kamchaticaoriginated from multiple individuals ofArabidopsis lyrataandArabidopsis halleri

(2009) RIE SHIMIZU-INATSUGI et al.   MOLECULAR ECOLOGY

Variability of zinc tolerance among and within populations of the pseudometallophyte species Arabidopsis halleri and possible role of directional selection

(2009) Claire-Lise Meyer et al.   NEW PHYTOLOGIST

Molecular mechanisms of metal hyperaccumulation in plants

(2009) Nathalie Verbruggen et al.   NEW PHYTOLOGIST

Expression of morphological and flowering time variation through allopolyploidization: an empirical study with 27 wheat synthetics and their parentalAegilops tauschiiaccessions

(2009) S. Takumi et al.   PLANT BREEDING

Investigating Heavy-metal Hyperaccumulation using Thlaspi caerulescens as a Model System

(2008) Matthew J. Milner et al.   ANNALS OF BOTANY

Evolution of metal hyperaccumulation required cis-regulatory changes and triplication of HMA4

(2008) Marc Hanikenne et al.   NATURE

AtHMA3, a P1B-ATPase Allowing Cd/Zn/Co/Pb Vacuolar Storage in Arabidopsis

(2008) M. Morel et al.   PLANT PHYSIOLOGY