Formalin-Fixed, Paraffin-Embedded Tissues (FFPE) as a Robust Source for the Profiling of Native and Protease-Generated Protein Amino Termini
出版年份 2016 全文链接
标题
Formalin-Fixed, Paraffin-Embedded Tissues (FFPE) as a Robust Source for the Profiling of Native and Protease-Generated Protein Amino Termini
作者
关键词
-
出版物
MOLECULAR & CELLULAR PROTEOMICS
Volume 15, Issue 6, Pages 2203-2213
出版商
American Society for Biochemistry & Molecular Biology (ASBMB)
发表日期
2016-04-18
DOI
10.1074/mcp.o115.056515
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Quantitative proteomic analysis of formalin–fixed, paraffin–embedded clear cell renal cell carcinoma tissue using stable isotopic dimethylation of primary amines
- (2015) J. Weißer et al. BMC GENOMICS
- Protein amino-terminal modifications and proteomic approaches for N-terminal profiling
- (2015) Zon W Lai et al. CURRENT OPINION IN CHEMICAL BIOLOGY
- A MALDI-Mass Spectrometry Imaging method applicable to different formalin-fixed paraffin-embedded human tissues
- (2015) Gabriele De Sio et al. Molecular BioSystems
- Enrichment of protein N-termini by charge reversal of internal peptides
- (2015) Zon W. Lai et al. PROTEOMICS
- Toward improved peptide feature detection in quantitative proteomics using stable isotope labeling
- (2015) Lars Nilse et al. Proteomics Clinical Applications
- MS-Viewer: A Web-based Spectral Viewer for Proteomics Results
- (2014) Peter R. Baker et al. MOLECULAR & CELLULAR PROTEOMICS
- ProteomeXchange provides globally coordinated proteomics data submission and dissemination
- (2014) Juan A Vizcaíno et al. NATURE BIOTECHNOLOGY
- Impact of routinely employed procedures for tissue processing on the proteomic analysis of formalin-fixed paraffin-embedded tissue
- (2014) Peter Bronsert et al. Proteomics Clinical Applications
- Double deficiency of cathepsins B and L results in massive secretome alterations and suggests a degradative cathepsin-MMP axis
- (2013) Stefan Tholen et al. CELLULAR AND MOLECULAR LIFE SCIENCES
- Proteomic identification of protease cleavage sites: cell-biological and biomedical applications
- (2013) Hasmik Shahinian et al. Expert Review of Proteomics
- Novel Highly Sensitive, Specific, and Straightforward Strategy for Comprehensive N-Terminal Proteomics Reveals Unknown Substrates of the Mitochondrial Peptidase Icp55
- (2013) A. Saskia Venne et al. JOURNAL OF PROTEOME RESEARCH
- Deletion of Cysteine Cathepsins B or L Yields Differential Impacts on Murine Skin Proteome and Degradome
- (2012) Stefan Tholen et al. MOLECULAR & CELLULAR PROTEOMICS
- Unbiased Selective Isolation of Protein N-terminal Peptides from Complex Proteome Samples Using Phospho Tagging (PTAG) and TiO2-based Depletion
- (2012) Geert P. M. Mommen et al. MOLECULAR & CELLULAR PROTEOMICS
- Novel protein extraction approach using micro-sized chamber for evaluation of proteins eluted from formalin-fixed paraffin-embedded tissue sections
- (2012) Keiichi Hatakeyama et al. Proteome Science
- Validation of a robust proteomic analysis carried out on formalin-fixed paraffin-embedded tissues of the pancreas obtained from mouse and human
- (2012) Kyoko Kojima et al. PROTEOMICS
- Proteomic analysis of formalin-fixed paraffin-embedded renal tissue samples by label-free MS: Assessment of overall technical variability and the impact of block age
- (2012) Rachel A. Craven et al. Proteomics Clinical Applications
- Proteomic workflow for analysis of archival formalin-fixed and paraffin-embedded clinical samples to a depth of 10 000 proteins
- (2012) Jacek R. Wiśniewski et al. Proteomics Clinical Applications
- Protein alpha-N-acetylation studied by N-terminomics
- (2011) Petra Van Damme et al. FEBS Journal
- A quantitative proteomic analysis of FFPE melanoma
- (2011) Stephanie Byrum et al. JOURNAL OF CUTANEOUS PATHOLOGY
- Comprehensive Tissue Processing Strategy for Quantitative Proteomics of Formalin-fixed Multiple Sclerosis Lesions
- (2011) Linda Ly et al. JOURNAL OF PROTEOME RESEARCH
- Protective role of cathepsin L in mouse skin carcinogenesis
- (2011) Fernando Benavides et al. MOLECULAR CARCINOGENESIS
- TopFIND, a knowledgebase linking protein termini with function
- (2011) Philipp F Lange et al. NATURE METHODS
- IL-4 induces cathepsin protease activity in tumor-associated macrophages to promote cancer growth and invasion
- (2010) V. Gocheva et al. GENES & DEVELOPMENT
- Quantitative Proteomic Analysis of Formalin-fixed and Paraffin-embedded Nasopharyngeal Carcinoma Using iTRAQ Labeling, Two-dimensional Liquid Chromatography, and Tandem Mass Spectrometry
- (2010) Zhefeng Xiao et al. JOURNAL OF HISTOCHEMISTRY & CYTOCHEMISTRY
- Formalin-Fixed Paraffin-Embedded (FFPE) Proteome Analysis Using Gel-Free and Gel-Based Proteomics
- (2010) Omid Azimzadeh et al. JOURNAL OF PROTEOME RESEARCH
- Proteome, Phosphoproteome, and N-Glycoproteome Are Quantitatively Preserved in Formalin-Fixed Paraffin-Embedded Tissue and Analyzable by High-Resolution Mass Spectrometry
- (2010) Paweł Ostasiewicz et al. JOURNAL OF PROTEOME RESEARCH
- Initial Development and Validation of a Novel Extraction Method for Quantitative Mining of the Formalin-Fixed, Paraffin-Embedded Tissue Proteome for Biomarker Investigations
- (2010) Niroshini J. Nirmalan et al. JOURNAL OF PROTEOME RESEARCH
- Isotopic labeling of terminal amines in complex samples identifies protein N-termini and protease cleavage products
- (2010) Oded Kleifeld et al. NATURE BIOTECHNOLOGY
- Quantitative proteomics using formalin-fixed paraffin-embedded tissues of oral squamous cell carcinoma
- (2009) Ayako Negishi et al. CANCER SCIENCE
- On-tissue protein identification and imaging by MALDI-Ion mobility mass spectrometry
- (2009) Jonathan Stauber et al. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY
- Grade-dependent Proteomics Characterization of Kidney Cancer
- (2009) Bertrand Perroud et al. MOLECULAR & CELLULAR PROTEOMICS
- Equivalence of Protein Inventories Obtained from Formalin-fixed Paraffin-embedded and Frozen Tissue in Multidimensional Liquid Chromatography-Tandem Mass Spectrometry Shotgun Proteomic Analysis
- (2009) Robert W. Sprung et al. MOLECULAR & CELLULAR PROTEOMICS
- Improved visualization of protein consensus sequences by iceLogo
- (2009) Niklaas Colaert et al. NATURE METHODS
- The Universal Protein Resource (UniProt) in 2010
- (2009) NUCLEIC ACIDS RESEARCH
- Deficiency for the cysteine protease cathepsin L promotes tumor progression in mouse epidermis
- (2009) J Dennemärker et al. ONCOGENE
- Mass spectrometric identification of formaldehyde-induced peptide modifications under in vivo protein cross-linking conditions
- (2008) Judy Toews et al. ANALYTICA CHIMICA ACTA
- ProteoWizard: open source software for rapid proteomics tools development
- (2008) Darren Kessner et al. BIOINFORMATICS
- OpenMS – An open-source software framework for mass spectrometry
- (2008) Marc Sturm et al. BMC BIOINFORMATICS
- Major Role of Cathepsin L for Producing the Peptide Hormones ACTH, β-Endorphin, and α-MSH, Illustrated by Protease Gene Knockout and Expression
- (2008) Lydiane Funkelstein et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Lysosomal cysteine peptidase cathepsin L protects against cardiac hypertrophy through blocking AKT/GSK3β signaling
- (2008) Qizhu Tang et al. JOURNAL OF MOLECULAR MEDICINE-JMM
- Spectral Probabilities and Generating Functions of Tandem Mass Spectra: A Strike against Decoy Databases
- (2008) Sangtae Kim et al. JOURNAL OF PROTEOME RESEARCH
- mzML: A single, unifying data format for mass spectrometer output
- (2008) Eric Deutsch PROTEOMICS
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now