PortPred: Exploiting deep learning embeddings of amino acid sequences for the identification of transporter proteins and their substrates
出版年份 2023 全文链接
标题
PortPred: Exploiting deep learning embeddings of amino acid sequences for the identification of transporter proteins and their substrates
作者
关键词
-
出版物
JOURNAL OF CELLULAR BIOCHEMISTRY
Volume -, Issue -, Pages -
出版商
Wiley
发表日期
2023-10-25
DOI
10.1002/jcb.30490
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- ProteinBERT: a universal deep-learning model of protein sequence and function
- (2022) Nadav Brandes et al. BIOINFORMATICS
- OrganelX web server for sub-peroxisomal and sub-mitochondrial protein localization and peroxisomal target signal detection
- (2022) Marco Anteghini et al. Computational and Structural Biotechnology Journal
- Biological structure and function emerge from scaling unsupervised learning to 250 million protein sequences
- (2021) Alexander Rives et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- In-Pero: Exploiting Deep Learning Embeddings of Protein Sequences to Predict the Localisation of Peroxisomal Proteins
- (2021) Marco Anteghini et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Lipid Transporters Beam Signals from Cell Membranes
- (2021) Miliça Ristovski et al. Membranes
- TranCEP: Predicting the substrate class of transmembrane transport proteins using compositional, evolutionary, and positional information
- (2020) Munira Alballa et al. PLoS One
- Corruption of the Pearson correlation coefficient by measurement error and its estimation, bias, and correction under different error models
- (2020) Edoardo Saccenti et al. Scientific Reports
- TooT-T: discrimination of transport proteins from non-transport proteins
- (2020) Munira Alballa et al. BMC BIOINFORMATICS
- Array programming with NumPy
- (2020) Charles R. Harris et al. NATURE
- UniProt: the universal protein knowledgebase in 2021
- (2020) et al. NUCLEIC ACIDS RESEARCH
- Using word embedding technique to efficiently represent protein sequences for identifying substrate specificities of transporters
- (2019) Trinh-Trung-Duong Nguyen et al. ANALYTICAL BIOCHEMISTRY
- Unified rational protein engineering with sequence-based deep representation learning
- (2019) Ethan C. Alley et al. NATURE METHODS
- Modeling aspects of the language of life through transfer-learning protein sequences
- (2019) Michael Heinzinger et al. BMC BIOINFORMATICS
- Optimal classifier for imbalanced data using Matthews Correlation Coefficient metric
- (2017) Sabri Boughorbel et al. PLoS One
- Prediction the Substrate Specificities of Membrane Transport Proteins Based on Support Vector Machine and Hybrid Features
- (2016) Liqi Li et al. IEEE-ACM Transactions on Computational Biology and Bioinformatics
- Logistic Regression
- (2016) Juliana Tolles et al. JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION
- SCMMTP: identifying and characterizing membrane transport proteins using propensity scores of dipeptides
- (2015) Yi-Fan Liou et al. BMC GENOMICS
- The Organic Anion Transporter (OAT) Family: A Systems Biology Perspective
- (2015) Sanjay K. Nigam et al. PHYSIOLOGICAL REVIEWS
- UniRef clusters: a comprehensive and scalable alternative for improving sequence similarity searches
- (2014) B. E. Suzek et al. BIOINFORMATICS
- TCS: A New Multiple Sequence Alignment Reliability Measure to Estimate Alignment Accuracy and Improve Phylogenetic Tree Reconstruction
- (2014) Jia-Ming Chang et al. MOLECULAR BIOLOGY AND EVOLUTION
- Prediction of Membrane Transport Proteins and Their Substrate Specificities Using Primary Sequence Information
- (2014) Nitish K. Mishra et al. PLoS One
- Expansion of the APC superfamily of secondary carriers
- (2014) Ake Vastermark et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Membrane transporters in a human genome-scale metabolic knowledgebase and their implications for disease
- (2014) Swagatika Sahoo et al. Frontiers in Physiology
- The ABCs of membrane transporters in health and disease (SLC series): Introduction
- (2013) Matthias A. Hediger et al. MOLECULAR ASPECTS OF MEDICINE
- Prediction of transporter targets using efficient RBF networks with PSSM profiles and biochemical properties
- (2011) Shu-An Chen et al. BIOINFORMATICS
- T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension
- (2011) P. Di Tommaso et al. NUCLEIC ACIDS RESEARCH
- Identification of Mannose Interacting Residues Using Local Composition
- (2011) Sandhya Agarwal et al. PLoS One
- Coordination Chemistry of Bacterial Metal Transport and Sensing
- (2009) Zhen Ma et al. CHEMICAL REVIEWS
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started