In-Pero: Exploiting Deep Learning Embeddings of Protein Sequences to Predict the Localisation of Peroxisomal Proteins

DeepPred-SubMito: A Novel Submitochondrial Localization Predictor Based on Multi-Channel Convolutional Neural Network and Dataset Balancing Treatment

(2020) Xiao Wang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Large-scale prediction and analysis of protein sub-mitochondrial localization with DeepMito

(2020) Castrense Savojardo et al.   BMC BIOINFORMATICS

Machine Learning Model for Identifying Antioxidant Proteins Using Features Calculated from Primary Sequences

(2020) Luu Ho Thanh Lam et al.   Biology-Basel

DeepMito: accurate prediction of protein sub-mitochondrial localization using convolutional neural networks

(2019) Castrense Savojardo et al.   BIOINFORMATICS

Enzyme annotation in UniProtKB using Rhea

(2019) Anne Morgat et al.   BIOINFORMATICS

Unified rational protein engineering with sequence-based deep representation learning

(2019) Ethan C. Alley et al.   NATURE METHODS

Modeling aspects of the language of life through transfer-learning protein sequences

(2019) Michael Heinzinger et al.   BMC BIOINFORMATICS

Identifying SNAREs by Incorporating Deep Learning Architecture and Amino Acid Embedding Representation

(2019) Nguyen Quoc Khanh Le et al.   Frontiers in Physiology

The peroxisome: an update on mysteries 2.0

(2018) Markus Islinger et al.   HISTOCHEMISTRY AND CELL BIOLOGY

Peroxisome biogenesis, membrane contact sites, and quality control

(2018) Jean‐Claude Farré et al.   EMBO REPORTS

The Alzheimer's disease–protective CD33 splice variant mediates adaptive loss of function via diversion to an intracellular pool

(2017) Shoib S. Siddiqui et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Proteome-wide prediction and annotation of mitochondrial and sub-mitochondrial proteins by incorporating domain information

(2017) Ravindra Kumar et al.   MITOCHONDRION

Optimal classifier for imbalanced data using Matthews Correlation Coefficient metric

(2017) Sabri Boughorbel et al.   PLoS One

Peroxisomal ABC transporters: functions and mechanism

(2015) A. Baker et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

TPpred3 detects and discriminates mitochondrial and chloroplastic targeting peptides in eukaryotic proteins

(2015) Castrense Savojardo et al.   BIOINFORMATICS

The peroxisome: an update on mysteries

(2012) Markus Islinger et al.   HISTOCHEMISTRY AND CELL BIOLOGY

Repeated double cross validation

(2009) Peter Filzmoser et al.   JOURNAL OF CHEMOMETRICS

PeroxisomeDB 2.0: an integrative view of the global peroxisomal metabolome

(2009) Agatha Schlüter et al.   NUCLEIC ACIDS RESEARCH