Escherichia coli tRNA (Gm18) methyltransferase (TrmH) requires the correct localization of its methylation site (G18) in the D-loop for efficient methylation

Post-Transcriptional Modifications of Conserved Nucleotides in the T-Loop of tRNA: A Tale of Functional Convergent Evolution

(2021) Martine Roovers et al.   Genes

Comparative patterns of modified nucleotides in individual tRNA species from a mesophilic and two thermophilic archaea

(2020) Philippe Wolff et al.   RNA

Bacterial tRNA 2′-O-methylation is dynamically regulated under stress conditions and modulates innate immune response

(2020) Adeline Galvanin et al.   NUCLEIC ACIDS RESEARCH

Regulatory Factors for tRNA Modifications in Extreme- Thermophilic Bacterium Thermus thermophilus

(2019) Hiroyuki Hori   Frontiers in Genetics

2'-O-methylation within prokaryotic and eukaryotic tRNA inhibits innate immune activation by endosomal Toll-like receptors but does not affect recognition of whole organisms

(2019) Isabel Freund et al.   RNA

A Family Divided: Distinct Structural and Mechanistic Features of the SpoU-TrmD (SPOUT) Methyltransferase Superfamily

(2018) Aiswarya Krishnamohan et al.   BIOCHEMISTRY

Unveiling structural and functional divergences of bacterial tRNA dihydrouridine synthases: perspectives on the evolution scenario

(2017) Charles Bou-Nader et al.   NUCLEIC ACIDS RESEARCH

MODOMICS: a database of RNA modification pathways. 2017 update

(2017) Pietro Boccaletto et al.   NUCLEIC ACIDS RESEARCH

Folate-/FAD-dependent tRNA methyltransferase from Thermus thermophilus regulates other modifications in tRNA at low temperatures

(2016) Ryota Yamagami et al.   GENES TO CELLS

Effects of polyamines fromThermus thermophilus, an extreme-thermophilic eubacterium, on tRNA methylation by tRNA (Gm18) methyltransferase (TrmH)

(2015) Hiroyuki Hori et al.   JOURNAL OF BIOCHEMISTRY

Improved solid-phase DNA probe method for tRNA purification: large-scale preparation and alteration of DNA fixation

(2015) A. Kazayama et al.   JOURNAL OF BIOCHEMISTRY

Substrate tRNA Recognition Mechanism of Eubacterial tRNA (m1A58) Methyltransferase (TrmI)

(2015) Hiroyuki Takuma et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Characterization of two homologous 2′-O-methyltransferases showing different specificities for their tRNA substrates

(2014) Jonathan Somme et al.   RNA

Methylated nucleosides in tRNA and tRNA methyltransferases

(2014) Hiroyuki Hori   Frontiers in Genetics

The Catalytic Domain of Topological Knot tRNA Methyltransferase (TrmH) Discriminates between Substrate tRNA and Nonsubstrate tRNA via an Induced-fit Process

(2013) Anna Ochi et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Crystal structure of tRNA m1G9 methyltransferase Trm10: insight into the catalytic mechanism and recognition of tRNA substrate

(2013) Zhenhua Shao et al.   NUCLEIC ACIDS RESEARCH

The tRNA recognition mechanism of the minimalist SPOUT methyltransferase, TrmL

(2013) Ru-Juan Liu et al.   NUCLEIC ACIDS RESEARCH

Unexpected expansion of tRNA substrate recognition by the yeast m1G9 methyltransferase Trm10

(2013) W. E. Swinehart et al.   RNA

The 2′-O-methylation status of a single guanosine controls transfer RNA–mediated Toll-like receptor 7 activation or inhibition

(2012) Stefanie Jöckel et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Identification of modifications in microbial, native tRNA that suppress immunostimulatory activity

(2012) Stefanie Gehrig et al.   JOURNAL OF EXPERIMENTAL MEDICINE

REFMAC5 for the refinement of macromolecular crystal structures

(2011) Garib N. Murshudov et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

tRNA Stabilization by Modified Nucleotides

(2010) Yuri Motorin et al.   BIOCHEMISTRY

Flexible Recognition of the tRNA G18 Methylation Target Site by TrmH Methyltransferase through First Binding and Induced Fit Processes

(2010) Anna Ochi et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Identification of Eukaryotic and Prokaryotic Methylthiotransferase for Biosynthesis of 2-Methylthio-N6-threonylcarbamoyladenosine in tRNA

(2010) Simon Arragain et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Pseudouridine at position 55 in tRNA controls the contents of other modified nucleotides for low-temperature adaptation in the extreme-thermophilic eubacterium Thermus thermophilus

(2010) Kazuo Ishida et al.   NUCLEIC ACIDS RESEARCH

YibK is the 2'-O-methyltransferase TrmL that modifies the wobble nucleotide in Escherichia coli tRNALeu isoacceptors

(2010) A. Benitez-Paez et al.   RNA

Optimization of the hybridization-based method for purification of thermostable tRNAs in the presence of tetraalkylammonium salts

(2009) Takashi Yokogawa et al.   NUCLEIC ACIDS RESEARCH

N 7-Methylguanine at position 46 (m7G46) in tRNA from Thermus thermophilus is required for cell viability at high temperatures through a tRNA modification network

(2009) Chie Tomikawa et al.   NUCLEIC ACIDS RESEARCH

tRNAdb 2009: compilation of tRNA sequences and tRNA genes

(2008) F. Juhling et al.   NUCLEIC ACIDS RESEARCH

Crystal Structure and Mutational Study of a Unique SpoU Family Archaeal Methylase that Forms 2′-O-Methylcytidine at Position 56 of tRNA

(2007) Mitsuo Kuratani et al.   JOURNAL OF MOLECULAR BIOLOGY