The soil microbiome at the Gi-FACE experiment responds to a moisture gradient but not to CO2 enrichment

Verrucomicrobial community structure and abundance as indicators for changes in chemical factors linked to soil fertility

(2015) Acacio Aparecido Navarrete et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Forest-to-pasture conversion increases the diversity of the phylum Verrucomicrobia in Amazon rainforest soils

(2015) Kshitij Ranjan et al.   Frontiers in Microbiology

Predominant bacterial and fungal assemblages in agricultural soils during a record drought/heat wave and linkages to enzyme activities of biogeochemical cycling

(2014) V. Acosta-Martínez et al.   APPLIED SOIL ECOLOGY

Network analysis reveals that bacteria and fungi form modules that correlate independently with soil parameters

(2014) Alexandre B. de Menezes et al.   ENVIRONMENTAL MICROBIOLOGY

Structure, Composition and Metagenomic Profile of Soil Microbiomes Associated to Agricultural Land Use and Tillage Systems in Argentine Pampas

(2014) Belén Carbonetto et al.   PLoS One

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

(2014) Paul J. McMurdie et al.   PLoS Computational Biology

Comparative metatranscriptomics reveals kingdom level changes in the rhizosphere microbiome of plants

(2013) Thomas R Turner et al.   ISME Journal

Reconstructing the Microbial Diversity and Function of Pre-Agricultural Tallgrass Prairie Soils in the United States

(2013) N. Fierer et al.   SCIENCE

Changes in Fungal Community Composition in Response to Elevated Atmospheric CO2 and Nitrogen Fertilization Varies with Soil Horizon

(2013) Carolyn F. Weber et al.   Frontiers in Microbiology

Elevated Carbon Dioxide Alters the Structure of Soil Microbial Communities

(2012) Ye Deng et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Mapping the niche space of soil microorganisms using taxonomy and traits

(2012) Jay T. Lennon et al.   ECOLOGY

Common bacterial responses in six ecosystems exposed to 10 years of elevated atmospheric carbon dioxide

(2012) John Dunbar et al.   ENVIRONMENTAL MICROBIOLOGY

Changes in the microbial community structure of bacteria, archaea and fungi in response to elevated CO2and warming in an Australian native grassland soil

(2012) Helen L. Hayden et al.   ENVIRONMENTAL MICROBIOLOGY

Effect of long-term free-air CO2 enrichment on the diversity and activity of soil methanogens in a periodically waterlogged grassland

(2012) Roey Angel et al.   SOIL BIOLOGY & BIOCHEMISTRY

Nine years of CO2 enrichment at the alpine treeline stimulates soil respiration but does not alter soil microbial communities

(2012) Frank Hagedorn et al.   SOIL BIOLOGY & BIOCHEMISTRY

Recovery of As-Yet-Uncultured Soil Acidobacteria on Dilute Solid Media

(2011) Isabelle F. George et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The role of environmental microorganisms in ecosystem responses to global change: current state of research and future outlooks

(2011) Kathryn M. Docherty et al.   BIOGEOCHEMISTRY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

The RCP greenhouse gas concentrations and their extensions from 1765 to 2300

(2011) Malte Meinshausen et al.   CLIMATIC CHANGE

The bacterial biogeography of British soils

(2011) Robert I. Griffiths et al.   ENVIRONMENTAL MICROBIOLOGY

Microbiome analysis of dairy cows fed pasture or total mixed ration diets

(2011) Alexandre B. de Menezes et al.   FEMS MICROBIOLOGY ECOLOGY

The impact of long-term CO2 enrichment and moisture levels on soil microbial community structure and enzyme activities

(2011) B. Guenet et al.   GEODERMA

Photosynthetic responses of 13 grassland species across 11 years of free-air CO2 enrichment is modest, consistent and independent of N supply

(2011) TALI D. LEE et al.   GLOBAL CHANGE BIOLOGY

Can differences in microbial abundances help explain enhanced N2O emissions in a permanent grassland under elevated atmospheric CO2?

(2011) Kathleen Regan et al.   GLOBAL CHANGE BIOLOGY

The phylogenetic composition and structure of soil microbial communities shifts in response to elevated carbon dioxide

(2011) Zhili He et al.   ISME Journal

Soil organisms and global climate change

(2011) S. G. Pritchard   PLANT PATHOLOGY

The under-recognized dominance of Verrucomicrobia in soil bacterial communities

(2011) Gaddy T. Bergmann et al.   SOIL BIOLOGY & BIOCHEMISTRY

Finding consistent patterns: A nonparametric approach for identifying differential expression in RNA-Seq data

(2011) Jun Li et al.   STATISTICAL METHODS IN MEDICAL RESEARCH

The Spatial Factor, Rather than Elevated CO2, Controls the Soil Bacterial Community in a Temperate Forest Ecosystem

(2010) Y. Ge et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Low Pore Connectivity Increases Bacterial Diversity in Soil

(2010) J. K. Carson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metagenomic analysis reveals a marked divergence in the structure of belowground microbial communities at elevated CO2

(2010) Zhili He et al.   ECOLOGY LETTERS

Microbial community resemblance methods differ in their ability to detect biologically relevant patterns

(2010) Justin Kuczynski et al.   NATURE METHODS

Microorganisms and climate change: terrestrial feedbacks and mitigation options

(2010) Brajesh K. Singh et al.   NATURE REVIEWS MICROBIOLOGY

A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria

(2010) S. Lucker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Soil Microbial Community Responses to Multiple Experimental Climate Change Drivers

(2009) H. F. Castro et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Diet-Induced Metabolic Improvements in a Hamster Model of Hypercholesterolemia Are Strongly Linked to Alterations of the Gut Microbiota

(2009) I. Martinez et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Stimulation of r- vs. K-selected microorganisms by elevated atmospheric CO2 depends on soil aggregate size

(2009) Maxim Dorodnikov et al.   FEMS MICROBIOLOGY ECOLOGY

Altered microbial community structure and organic matter composition under elevated CO2 and N fertilization in the duke forest

(2009) XIAOJUAN FENG et al.   GLOBAL CHANGE BIOLOGY

Elevated atmospheric CO2increases microbial growth rates in soil: results of three CO2enrichment experiments

(2009) EVGENIA BLAGODATSKAYA et al.   GLOBAL CHANGE BIOLOGY

Specific rhizosphere bacterial and fungal groups respond differently to elevated atmospheric CO2

(2009) Barbara Drigo et al.   ISME Journal

A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses

(2009) Ryan T Jones et al.   ISME Journal

Cultivation of Uncultured Chloroflexi Subphyla: Significance and Ecophysiology of Formerly Uncultured Chloroflexi 'Subphylum I' with Natural and Biotechnological Relevance

(2009) Takeshi Yamada et al.   MICROBES AND ENVIRONMENTS

A High-Throughput DNA Sequence Aligner for Microbial Ecology Studies

(2009) Patrick D. Schloss   PLoS One

Effect of elevated CO2 on soil N dynamics in a temperate grassland soil

(2009) Christoph Müller et al.   SOIL BIOLOGY & BIOCHEMISTRY

Assessment of 10 years of CO2 fumigation on soil microbial communities and function in a sweetgum plantation

(2009) Emily E. Austin et al.   SOIL BIOLOGY & BIOCHEMISTRY

Elevated CO2 increases root exudation from loblolly pine (Pinus taeda) seedlings as an N-mediated response

(2009) R. P. Phillips et al.   TREE PHYSIOLOGY

Increased Litter Build Up and Soil Organic Matter Stabilization in a Poplar Plantation After 6 Years of Atmospheric CO2 Enrichment (FACE): Final Results of POP-EuroFACE Compared to Other Forest FACE Experiments

(2008) Marcel R. Hoosbeek et al.   ECOSYSTEMS

Elevated atmospheric CO2affects soil microbial diversity associated with trembling aspen

(2008) Celine Lesaulnier et al.   ENVIRONMENTAL MICROBIOLOGY

Elevated CO2 stimulates N2O emissions in permanent grassland

(2008) Claudia Kammann et al.   SOIL BIOLOGY & BIOCHEMISTRY