Impact of Cropping Systems, Soil Inoculum, and Plant Species Identity on Soil Bacterial Community Structure

Using Sex to Cure the Genome

(2016) Eduardo P. C. Rocha   PLOS BIOLOGY

Crop rotational diversity enhances belowground communities and functions in an agroecosystem

(2015) L. K. Tiemann et al.   ECOLOGY LETTERS

Plant diversity drives soil microbial biomass carbon in grasslands irrespective of global environmental change factors

(2015) Madhav Prakash Thakur et al.   GLOBAL CHANGE BIOLOGY

Successional Trajectories of Rhizosphere Bacterial Communities over Consecutive Seasons

(2015) Shengjing Shi et al.   mBio

Soil microbial community variation correlates most strongly with plant species identity, followed by soil chemistry, spatial location and plant genus

(2015) J. H. Burns et al.   AoB Plants

Farm management, not soil microbial diversity, controls nutrient loss from smallholder tropical agriculture

(2015) Stephen A. Wood et al.   Frontiers in Microbiology

STAMP: statistical analysis of taxonomic and functional profiles

(2014) Donovan H. Parks et al.   BIOINFORMATICS

Distinct soil microbial diversity under long-term organic and conventional farming

(2014) Martin Hartmann et al.   ISME Journal

The quest for a unified view of bacterial land colonization

(2014) Hao Wu et al.   ISME Journal

Belowground biodiversity and ecosystem functioning

(2014) Richard D. Bardgett et al.   NATURE

Inhibitory and toxic effects of extracellular self-DNA in litter: a mechanism for negative plant-soil feedbacks?

(2014) Stefano Mazzoleni et al.   NEW PHYTOLOGIST

Unravelling the cross-talk between iron starvation and oxidative stress responses highlights the key role of PerR (alr0957) in peroxide signalling in the cyanobacteriumNostoc PCC 7120

(2014) Fan Yingping et al.   Environmental Microbiology Reports

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Integrity of bacterial genomic DNA after autoclaving: possible implications for horizontal gene transfer and clinical waste management

(2013) J.M. Yap et al.   JOURNAL OF HOSPITAL INFECTION

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

Reconstructing the Microbial Diversity and Function of Pre-Agricultural Tallgrass Prairie Soils in the United States

(2013) N. Fierer et al.   SCIENCE

Plant growth and phenolic compounds in the rhizosphere soil of wild oat (Avena fatua L.)

(2013) Anna Iannucci et al.   Frontiers in Plant Science

Microbial Population and Community Dynamics on Plant Roots and Their Feedbacks on Plant Communities

(2012) James D. Bever et al.   Annual Review of Microbiology

PANDAseq: paired-end assembler for illumina sequences

(2012) Andre P Masella et al.   BMC BIOINFORMATICS

Direct Comparisons of Illumina vs. Roche 454 Sequencing Technologies on the Same Microbial Community DNA Sample

(2012) Chengwei Luo et al.   PLoS One

Does soil biota benefit from organic farming in complex vs. simple landscapes?

(2011) Andreas Flohre et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Belowground biodiversity effects of plant symbionts support aboveground productivity

(2011) Cameron Wagg et al.   ECOLOGY LETTERS

The under-recognized dominance of Verrucomicrobia in soil bacterial communities

(2011) Gaddy T. Bergmann et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil beneficial bacteria and their role in plant growth promotion: a review

(2010) Rifat Hayat et al.   ANNALS OF MICROBIOLOGY

Soil biota community structure and abundance under agricultural intensification and extensification

(2010) Maria B. Postma-Blaauw et al.   ECOLOGY

Soil microbes drive the classic plant diversity–productivity pattern

(2010) Stefan A. Schnitzer et al.   ECOLOGY

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

(2010) Susan M. Huse et al.   ENVIRONMENTAL MICROBIOLOGY

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Effect of Soil Inoculum Density of Fusarium oxysporum f. sp. vasinfectum Race 4 on Disease Development in Cotton

(2009) Jianjun J. Hao et al.   PLANT DISEASE

Impact of cropping systems on the weed seed banks in the northern Great Plains, USA

(2009) KRISTIN S.B. HARBUCK et al.   WEED BIOLOGY AND MANAGEMENT

Using Species-Area Curves to Examine Weed Communities in Organic and Conventional Spring Wheat Systems

(2009) Fredric W. Pollnac et al.   WEED SCIENCE

Selective progressive response of soil microbial community to wild oat roots

(2008) Kristen M DeAngelis et al.   ISME Journal

The photorespiratory glycolate metabolism is essential for cyanobacteria and might have been conveyed endosymbiontically to plants

(2008) M. Eisenhut et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA