Contrasting Ecological Processes and Functional Compositions Between Intestinal Bacterial Community in Healthy and Diseased Shrimp

Advances, challenges, and directions in shrimp disease control: the guidelines from an ecological perspective

(2016) Jinbo Xiong et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Review of current disease threats for cultivated penaeid shrimp in Asia

(2016) Siripong Thitamadee et al.   AQUACULTURE

Environmental filtering decreases with fish development for the assembly of gut microbiota

(2016) Qingyun Yan et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial dynamics in intestines of the black tiger shrimp and the Pacific white shrimp during Vibrio harveyi exposure

(2016) Wanilada Rungrassamee et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

Functional Redundancy-Induced Stability of Gut Microbiota Subjected to Disturbance

(2016) Andrés Moya et al.   TRENDS IN MICROBIOLOGY

Vertebrate Hosts as Islands: Dynamics of Selection, Immigration, Loss, Persistence, and Potential Function of Bacteria on Salamander Skin

(2016) Andrew H. Loudon et al.   Frontiers in Microbiology

Dynamic Succession of Groundwater Functional Microbial Communities in Response to Emulsified Vegetable Oil Amendment during SustainedIn SituU(VI) Reduction

(2015) Ping Zhang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Changes in intestinal bacterial communities are closely associated with shrimp disease severity

(2015) Jinbo Xiong et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Temperature sensitivity of soil bacterial community along contrasting warming gradient

(2015) Jinfeng Wu et al.   APPLIED SOIL ECOLOGY

Network succession reveals the importance of competition in response to emulsified vegetable oil amendment for uranium bioremediation

(2015) Ye Deng et al.   ENVIRONMENTAL MICROBIOLOGY

Contribution of neutral processes to the assembly of gut microbial communities in the zebrafish over host development

(2015) Adam R Burns et al.   ISME Journal

Community assembly of a euryhaline fish microbiome during salinity acclimation

(2015) Victor T. Schmidt et al.   MOLECULAR ECOLOGY

Effects of Host Phylogeny and Habitats on Gut Microbiomes of Oriental River Prawn (Macrobrachium nipponense)

(2015) Tzong-Der Tzeng et al.   PLoS One

Evidence of bacterioplankton community adaptation in response to long-term mariculture disturbance

(2015) Jinbo Xiong et al.   Scientific Reports

The cellular community in the intestine of the shrimp Penaeus penicillatus and its culture environments

(2014) Chun-zhong Wang et al.   FISHERIES SCIENCE

Deterministic processes guide long-term synchronised population dynamics in replicate anaerobic digesters

(2014) Inka Vanwonterghem et al.   ISME Journal

Ecological theory as a foundation to control pathogenic invasion in aquaculture

(2014) Peter De Schryver et al.   ISME Journal

Divergent Responses of Soil Fungi Functional Groups to Short-term Warming

(2014) Jinbo Xiong et al.   MICROBIAL ECOLOGY

Characterization of Intestinal Bacteria in Wild and Domesticated Adult Black Tiger Shrimp (Penaeus monodon)

(2014) Wanilada Rungrassamee et al.   PLoS One

The Colonization Dynamics of the Gut Microbiota in Tilapia Larvae

(2014) Christos Giatsis et al.   PLoS One

Stochasticity, succession, and environmental perturbations in a fluidic ecosystem

(2014) Jizhong Zhou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Interactions between fungi and bacteria influence microbial community structure in the Megachile rotundata larval gut

(2014) Q. S. McFrederick et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Evaluating the potential of marine Bacteriovorax sp. DA5 as a biocontrol agent against vibriosis in Litopenaeus vannamei larvae

(2014) Chongqing Wen et al.   VETERINARY MICROBIOLOGY

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

(2014) Paul J. McMurdie et al.   PLoS Computational Biology

Changes in community assembly may shift the relationship between biodiversity and ecosystem function

(2014) Joseph E. Knelman et al.   Frontiers in Microbiology

Demonstrating microbial co-occurrence pattern analyses within and between ecosystems

(2014) Ryan J. Williams et al.   Frontiers in Microbiology

Biological, physiological, immunological and nutritional assessment of farm-reared Litopenaeus stylirostris shrimp affected or unaffected by vibriosis

(2013) Chantal Mugnier et al.   AQUACULTURE

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

Signals from the lysosome: a control centre for cellular clearance and energy metabolism

(2013) Carmine Settembre et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Environmental conditions and community evenness determine the outcome of biological invasion

(2013) Karen De Roy et al.   Nature Communications

Bacterial community structure and functional contributions to emergence of health or necrotizing enterocolitis in preterm infants

(2013) Erika C Claud et al.   Microbiome

Molecular ecological network analyses

(2012) Ye Deng et al.   BMC BIOINFORMATICS

How to assemble a beneficial microbiome in three easy steps

(2012) István Scheuring et al.   ECOLOGY LETTERS

The contributing role of the intestinal microbiota in stressor-induced increases in susceptibility to enteric infection and systemic immunomodulation

(2012) Michael T. Bailey   HORMONES AND BEHAVIOR

Longitudinal Analyses of Gut Mucosal Microbiotas in Ulcerative Colitis in Relation to Patient Age and Disease Severity and Duration

(2012) Alemu Fite et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Environmental and ecological factors that shape the gut bacterial communities of fish: a meta-analysis

(2012) KAREN E. SULLAM et al.   MOLECULAR ECOLOGY

Microbial interactions: from networks to models

(2012) Karoline Faust et al.   NATURE REVIEWS MICROBIOLOGY

Fundamentals of Microbial Community Resistance and Resilience

(2012) Ashley Shade et al.   Frontiers in Microbiology

Disentangling the importance of ecological niches from stochastic processes across scales

(2011) J. M. Chase et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Disentangling the Drivers of   Diversity Along Latitudinal and Elevational Gradients

(2011) N. J. B. Kraft et al.   SCIENCE

Using null models to disentangle variation in community dissimilarity from variation in α-diversity

(2011) Jonathan M. Chase et al.   Ecosphere

Mechanisms controlling pathogen colonization of the gut

(2010) Bärbel Stecher et al.   CURRENT OPINION IN MICROBIOLOGY

Host–microbiota interactions within the fish intestinal ecosystem

(2010) T Pérez et al.   Mucosal Immunology

Like Will to Like: Abundances of Closely Related Species Can Predict Susceptibility to Intestinal Colonization by Pathogenic and Commensal Bacteria

(2010) Bärbel Stecher et al.   PLoS Pathogens

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Bacterial Adhesins in Host-Microbe Interactions

(2009) Kimberly A. Kline et al.   Cell Host & Microbe

Probiotics in shrimp aquaculture: Avenues and challenges

(2009) A.S. Ninawe et al.   CRITICAL REVIEWS IN MICROBIOLOGY

Regional invariance among microbial communities

(2009) Örjan Östman et al.   ECOLOGY LETTERS

Robustness of the Bacterial Community in the Cabbage White Butterfly Larval Midgut

(2009) Courtney J. Robinson et al.   MICROBIAL ECOLOGY

Microbial community structure and its functional implications

(2009) Jed A. Fuhrman   NATURE

Antibiotic-Induced Perturbations of the Intestinal Microbiota Alter Host Susceptibility to Enteric Infection

(2008) I. Sekirov et al.   INFECTION AND IMMUNITY

Deterministic control on community assembly peaks at intermediate levels of disturbance

(2008) Fabio Lepori et al.   OIKOS

Resistance, resilience, and redundancy in microbial communities

(2008) S. D. Allison et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA