Genome-wide Escherichia coli stress response and improved tolerance towards industrially relevant chemicals

Engineering of high yield production of L-serine in Escherichia coli

(2015) Hemanshu Mundhada et al.   BIOTECHNOLOGY AND BIOENGINEERING

Differential expression of small RNAs under chemical stress and fed-batch fermentation in E. coli

(2015) Martin Holm Rau et al.   BMC GENOMICS

Improved n -butanol tolerance in Escherichia coli by controlling membrane related functions

(2015) Le Minh Bui et al.   JOURNAL OF BIOTECHNOLOGY

Evolution for exogenous octanoic acid tolerance improves carboxylic acid production and membrane integrity

(2015) Liam A. Royce et al.   METABOLIC ENGINEERING

Tolerance engineering in bacteria for the production of advanced biofuels and chemicals

(2015) Aindrila Mukhopadhyay   TRENDS IN MICROBIOLOGY

Combinatorial Strategies for Improving Multiple-Stress Resistance in Industrially Relevant Escherichia coli Strains

(2014) Rebecca M. Lennen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Furfural and hydroxymethylfurfural tolerance inEscherichia coliΔacrRregulatory mutants

(2014) Annette Lin Luhe et al.   BIOTECHNOLOGY AND APPLIED BIOCHEMISTRY

Microbial tolerance engineering toward biochemical production: from lignocellulose to products

(2014) Hua Ling et al.   CURRENT OPINION IN BIOTECHNOLOGY

Ubiquinone accumulation improves osmotic-stress tolerance in Escherichia coli

(2014) Daniel C Sévin et al.   Nature Chemical Biology

Transcriptomic Analysis of Carboxylic Acid Challenge in Escherichia coli: Beyond Membrane Damage

(2014) Liam A. Royce et al.   PLoS One

Genome-Wide Mapping of Furfural Tolerance Genes in Escherichia coli

(2014) Tirzah Y. Glebes et al.   PLoS One

Correcting direct effects of ethanol on translation and transcription machinery confers ethanol tolerance in bacteria

(2014) R. J. F. Haft et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic improvement of n-butanol tolerance in Escherichia coli by heterologous overexpression of groESL operon from Clostridium acetobutylicum

(2014) Ali S. Abdelaal et al.   3 Biotech

Tools for developing tolerance to toxic chemicals in microbial systems and perspectives on moving the field forward and into the industrial setting

(2014) George L Peabody et al.   Current Opinion in Chemical Engineering

Genetic Determinants forn-Butanol Tolerance in Evolved Escherichia coli Mutants: Cross Adaptation and Antagonistic Pleiotropy betweenn-Butanol and Other Stressors

(2013) Luis H. Reyes et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Improving Escherichia coli FucO for Furfural Tolerance by Saturation Mutagenesis of Individual Amino Acid Positions

(2013) Huabao Zheng et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

EnhancingE. coliisobutanol tolerance through engineering its global transcription factor cAMP receptor protein (CRP)

(2013) Huiqing Chong et al.   BIOTECHNOLOGY AND BIOENGINEERING

Engineering stress tolerance ofEscherichia coliby stress-induced mutagenesis (SIM)-based adaptive evolution

(2013) Linjiang Zhu et al.   Biotechnology Journal

The 216-bpmarBgene of themarRABoperon inEscherichia coliencodes a periplasmic protein which reduces the transcription rate ofmarA

(2013) Laura Vinué et al.   FEMS MICROBIOLOGY LETTERS

Evolutionary potential, cross-stress behavior and the genetic basis of acquired stress resistance in Escherichia coli

(2013) M. Dragosits et al.   Molecular Systems Biology

Enriching the gene set analysis of genome-wide data by incorporating directionality of gene expression and combining statistical hypotheses and methods

(2013) Leif Väremo et al.   NUCLEIC ACIDS RESEARCH

Improving Acetate Tolerance of Escherichia coli by Rewiring Its Global Regulator cAMP Receptor Protein (CRP)

(2013) Huiqing Chong et al.   PLoS One

Understanding biocatalyst inhibition by carboxylic acids

(2013) Laura R. Jarboe et al.   Frontiers in Microbiology

Engineering global transcription factor cyclic AMP receptor protein of Escherichia coli for improved 1-butanol tolerance

(2012) Hongfang Zhang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Laboratory metabolic evolution improves acetate tolerance and growth on acetate of ethanologenic Escherichia coli under non-aerated conditions in glucose-mineral medium

(2012) M. T. Fernández-Sandoval et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Bio-based production of C2-C6 platform chemicals

(2012) Yu-Sin Jang et al.   BIOTECHNOLOGY AND BIOENGINEERING

Genome-wide identification of novel small RNAs in Pseudomonas aeruginosa

(2012) María Gómez-Lozano et al.   ENVIRONMENTAL MICROBIOLOGY

Identification of Transport Proteins Involved in Free Fatty Acid Efflux in Escherichia coli

(2012) R. M. Lennen et al.   JOURNAL OF BACTERIOLOGY

Enhancement of geraniol resistance of Escherichia coli by MarA overexpression

(2012) Asad Ali Shah et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more

(2012) Heladia Salgado et al.   NUCLEIC ACIDS RESEARCH

ESSENTIALS: Software for Rapid Analysis of High Throughput Transposon Insertion Sequencing Data

(2012) Aldert Zomer et al.   PLoS One

Toward a Semisynthetic Stress Response System To Engineer Microbial Solvent Tolerance

(2012) K. A. Zingaro et al.   mBio

Membrane Stresses Induced by Overproduction of Free Fatty Acids in Escherichia coli

(2011) Rebecca M. Lennen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Perspective on opportunities in industrial biotechnology in renewable chemicals

(2011) Brent Erickson et al.   Biotechnology Journal

Evolution combined with genomic study elucidates genetic bases of isobutanol tolerance in Escherichia coli

(2011) Jeremy J Minty et al.   Microbial Cell Factories

Genomic Library Screens for Genes Involved in n-Butanol Tolerance in Escherichia coli

(2011) Luis H. Reyes et al.   PLoS One

Systems metabolic engineering for chemicals and materials

(2011) Jeong Wook Lee et al.   TRENDS IN BIOTECHNOLOGY

Functional Genomic Study of Exogenous n-Butanol Stress in Escherichia coli

(2010) B. J. Rutherford et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Engineering butanol-tolerance in escherichia coli with artificial transcription factor libraries

(2010) Ju Young Lee et al.   BIOTECHNOLOGY AND BIOENGINEERING

A process for microbial hydrocarbon synthesis: Overproduction of fatty acids inEscherichia coliand catalytic conversion to alkanes

(2010) Rebecca M. Lennen et al.   BIOTECHNOLOGY AND BIOENGINEERING

Long-term continuous adaptation of Escherichia coli to high succinate stress and transcriptome analysis of the tolerant strain

(2010) Yeong-Deok Kwon et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

A comparative view of metabolite and substrate stress and tolerance in microbial bioprocessing: From biofuels and chemicals, to biocatalysis and bioremediation

(2010) Sergios A. Nicolaou et al.   METABOLIC ENGINEERING

Elucidating acetate tolerance in E. coli using a genome-wide approach

(2010) Nicholas R. Sandoval et al.   METABOLIC ENGINEERING

Evolution, genomic analysis, and reconstruction of isobutanol tolerance in Escherichia coli

(2010) Shota Atsumi et al.   Molecular Systems Biology

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

Furfural Inhibits Growth by Limiting Sulfur Assimilation in Ethanologenic Escherichia coli Strain LY180

(2009) E. N. Miller et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

An integrated network approach identifies the isobutanol response network of Escherichia coli

(2009) Mark P Brynildsen et al.   Molecular Systems Biology

De novo biosynthetic pathways: rational design of microbial chemical factories

(2008) Kristala L Jones Prather et al.   CURRENT OPINION IN BIOTECHNOLOGY