Whole Genome Resequencing Reveals Genetic Diversity and Selection Signatures of Ethiopian Indigenous Cattle Adapted to Local Environments

Genomic adaptation of Ethiopian indigenous cattle to high altitude

(2022) Endashaw Terefe et al.   Frontiers in Genetics

Genetic variation of Nigerian cattle inferred from maternal and paternal genetic markers

(2021) David H. Mauki et al.   PeerJ

Human inbreeding has decreased in time through the Holocene

(2021) Francisco C. Ceballos et al.   CURRENT BIOLOGY

Adipocyte NR1D1 dictates adipose tissue expansion during obesity

(2021) Ann Louise Hunter et al.   eLife

Circadian clock regulates granulosa cell autophagy through NR1D1-mediated inhibition of ATG5

(2021) Jing Zhang et al.   AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY

Whole-Genome Resequencing of Worldwide Wild and Domestic Sheep Elucidates Genetic Diversity, Introgression, and Agronomically Important Loci

(2021) Feng-Hua Lv et al.   MOLECULAR BIOLOGY AND EVOLUTION

Obesity-Associated GNAS Mutations and the Melanocortin Pathway

(2021) Edson Mendes de Oliveira et al.   NEW ENGLAND JOURNAL OF MEDICINE

NR1D1 Deletion Induces Rupture-Prone Vulnerable Plaques by Regulating Macrophage Pyroptosis via the NF-κB/NLRP3 Inflammasome Pathway

(2021) Zhinan Wu et al.   Oxidative Medicine and Cellular Longevity

Genome-wide Association Study for Carcass Primal Cut Yields Using Single-step Bayesian Approach in Hanwoo Cattle

(2021) Masoumeh Naserkheil et al.   Frontiers in Genetics

The Distribution, Expression Patterns and Functional Analysis of NR1D1 and NR4A2 in the Reproductive Axis Tissues of the Male Tianzhu White Yak

(2021) Lijun Dai et al.   Animals

NR1D1 targeting CYP19A1 inhibits estrogen synthesis in ovarian granulosa cells

(2021) Liguang Wang et al.   THERIOGENOLOGY

Genetic Diversity and Population Structure of Six Ethiopian Cattle Breeds from Different Geographical Regions Using High Density Single Nucleotide Polymorphisms

(2020) Selam Meseret et al.   Livestock Science

Regulation of stress-induced hematopoiesis

(2020) Georgina A. Anderson et al.   CURRENT OPINION IN HEMATOLOGY

Structural insights into the inhibition mechanism of human sterol O-acyltransferase 1 by a competitive inhibitor

(2020) Chengcheng Guan et al.   Nature Communications

Comparative analyses of copy number variations between Bos taurus and Bos indicus

(2020) Yan Hu et al.   BMC GENOMICS

The mosaic genome of indigenous African cattle as a unique genetic resource for African pastoralism

(2020) Kwondo Kim et al.   NATURE GENETICS

The patterns of admixture, divergence, and ancestry of African cattle populations determined from genome-wide SNP data

(2020) N. Z. Gebrehiwot et al.   BMC GENOMICS

Bisphenol A attenuates testosterone production in Leydig cells via the inhibition of NR1D1 signaling

(2020) Cuimei Li et al.   CHEMOSPHERE

GNAS gene is an important regulator of insulin secretory capacity in pancreatic β-cells

(2019) Jalal Taneera et al.   GENE

Variations in mitochondrial cytochrome b region among Ethiopian indigenous cattle populations assert Bos taurus maternal origin and historical dynamics

(2018) Getinet Mekuriaw Tarekegn et al.   ASIAN-AUSTRALASIAN JOURNAL OF ANIMAL SCIENCES

Inbreeding and runs of homozygosity before and after genomic selection in North American Holstein cattle

(2018) Mehrnush Forutan et al.   BMC GENOMICS

Vascular smooth muscle contraction in hypertension

(2018) Rhian M Touyz et al.   CARDIOVASCULAR RESEARCH

Domestication of cattle: two or three events?

(2018) Daniel Pitt et al.   Evolutionary Applications

Secretory phospholipase A2 group IIA enhances the metabolic rate and increases glucose utilization in response to thyroid hormone

(2018) Michael S. Kuefner et al.   FASEB JOURNAL

Regulation of unfolded protein response in hematopoietic stem cells

(2018) Valgardur Sigurdsson et al.   INTERNATIONAL JOURNAL OF HEMATOLOGY

Circadian clock component REV-ERBα controls homeostatic regulation of pulmonary inflammation

(2018) Marie Pariollaud et al.   JOURNAL OF CLINICAL INVESTIGATION

Spontaneous T Cell Proliferation: A Physiologic Process to Create and Maintain Homeostatic Balance and Diversity of the Immune System

(2018) Booki Min   Frontiers in Immunology

Genome-wide scan reveals divergent selection among taurine and zebu cattle populations from different regions

(2018) Z. Edea et al.   ANIMAL GENETICS

Genomic regions underlying uniformity of yearling weight in Nellore cattle evaluated under different response variables

(2018) Laiza Helena de Souza Iung et al.   BMC GENOMICS

PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format files

(2018) Chi Zhang et al.   BIOINFORMATICS

Climate Adaptation of Tropical Cattle

(2017) W. Barendse   Annual Review of Animal Biosciences

Uncovering Adaptation from Sequence Data: Lessons from Genome Resequencing of Four Cattle Breeds

(2016) Simon Boitard et al.   GENETICS

Uncovering Adaptation from Sequence Data: Lessons from Genome Resequencing of Four Cattle Breeds

(2016) Simon Boitard et al.   GENETICS

- Invited Review - African Indigenous Cattle: Unique Genetic Resources in a Rapidly Changing World

(2015) Okeyo Mwai et al.   ASIAN-AUSTRALASIAN JOURNAL OF ANIMAL SCIENCES

Runs of homozygosity and distribution of functional variants in the cattle genome

(2015) Qianqian Zhang et al.   BMC GENOMICS

Measuring individual inbreeding in the age of genomics: marker-based measures are better than pedigrees

(2015) M Kardos et al.   HEREDITY

UV Light Potentiates STING (Stimulator of Interferon Genes)-dependent Innate Immune Signaling through Deregulation of ULK1 (Unc51-like Kinase 1)

(2015) Michael G. Kemp et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

SNeP: a tool to estimate trends in recent effective population size trajectories using genome-wide SNP data

(2015) Mario Barbato et al.   Frontiers in Genetics

Analysis of runs of homozygosity and their relationship with inbreeding in five cattle breeds farmed in Italy

(2014) Gabriele Marras et al.   ANIMAL GENETICS

MZB1 is a GRP94 cochaperone that enables proper immunoglobulin heavy chain biosynthesis upon ER stress

(2014) M. Rosenbaum et al.   GENES & DEVELOPMENT

The Novel Small Leucine-rich Protein Chondroadherin-like (CHADL) Is Expressed in Cartilage and Modulates Chondrocyte Differentiation

(2014) Viveka Tillgren et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Relationships between adaptive and neutral genetic diversity and ecological structure and functioning: a meta-analysis

(2014) Raj Whitlock   JOURNAL OF ECOLOGY

Inbreeding and runs of homozygosity: A possible solution to an old problem

(2014) Ino Curik et al.   Livestock Science

Genomic Signatures Reveal New Evidences for Selection of Important Traits in Domestic Cattle

(2014) Lingyang Xu et al.   MOLECULAR BIOLOGY AND EVOLUTION

Thyroid hormone receptors and resistance to thyroid hormone disorders

(2014) Tânia M. Ortiga-Carvalho et al.   Nature Reviews Endocrinology

Phenotypic characteristics and trypanosome prevalence of Mursi cattle breed in the Bodi and Mursi districts of South Omo Zone, southwest Ethiopia

(2014) Endashaw Terefe et al.   TROPICAL ANIMAL HEALTH AND PRODUCTION

Classic Selective Sweeps Revealed by Massive Sequencing in Cattle

(2014) Saber Qanbari et al.   PLoS Genetics

Worldwide Patterns of Ancestry, Divergence, and Admixture in Domesticated Cattle

(2014) Jared E. Decker et al.   PLoS Genetics

Bag6/Bat3/Scythe: A novel chaperone activity with diverse regulatory functions in protein biogenesis and degradation

(2013) Jin-Gu Lee et al.   BIOESSAYS

Whole Genome Sequencing versus Traditional Genotyping for Investigation of a Mycobacterium tuberculosis Outbreak: A Longitudinal Molecular Epidemiological Study

(2013) Andreas Roetzer et al.   PLOS MEDICINE

Genetic diversity, population structure and relationships in indigenous cattle populations of Ethiopia and Korean Hanwoo breeds using SNP markers

(2013) Zewdu Edea et al.   Frontiers in Genetics

Across breed multi-trait random regression genomic predictions in the Nordic Red dairy cattle

(2012) M.L. Makgahlela et al.   JOURNAL OF ANIMAL BREEDING AND GENETICS

High-Altitude Pulmonary Hypertension in Cattle (Brisket Disease): Candidate Genes and Gene Expression Profiling of Peripheral Blood Mononuclear Cells

(2012) John H. Newman et al.   Pulmonary Circulation

Genetic diversity and admixture of indigenous cattle from North Ethiopia: implications of historical introgressions in the gateway region to Africa

(2011) M. Zerabruk et al.   ANIMAL GENETICS

Bidirectional transcription from human LRRTM2/CTNNA1 and LRRTM1/CTNNA2 gene loci leads to expression of N-terminally truncated CTNNA1 and CTNNA2 isoforms

(2011) Martin Kask et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

DNA sequence polymorphisms within the bovine guanine nucleotide-binding protein Gs subunit alpha (Gsα)-encoding (GNAS) genomic imprinting domain are associated with performance traits

(2011) Klaudia M Sikora et al.   BMC GENETICS

Oral Administration of a Retinoic Acid Receptor Antagonist Reversibly Inhibits Spermatogenesis in Mice

(2011) Sanny S. W. Chung et al.   ENDOCRINOLOGY

Hypoxia: Adapting to High Altitude by Mutating EPAS-1, the Gene Encoding HIF-2α

(2011) Martha C. Tissot van Patot et al.   HIGH ALTITUDE MEDICINE & BIOLOGY

Type 2 innate immune responses and the natural helper cell

(2011) Shigeo Koyasu et al.   IMMUNOLOGY

Genotype and SNP calling from next-generation sequencing data

(2011) Rasmus Nielsen et al.   NATURE REVIEWS GENETICS

Genome Scan for Parent-of-Origin QTL Effects on Bovine Growth and Carcass Traits

(2011) Ikhide G. Imumorin et al.   Frontiers in Genetics

Metabolic and hormonal acclimation to heat stress in domesticated ruminants

(2010) U. Bernabucci et al.   Animal

Genetic heterogeneity and selection signature at the KIT gene in pigs showing different coat colours and patterns

(2010) L. Fontanesi et al.   ANIMAL GENETICS

The transcriptional response of normal and rheumatoid arthritis synovial fibroblasts to hypoxia

(2010) Manuel J. Del Rey et al.   ARTHRITIS AND RHEUMATISM

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Population differentiation as a test for selective sweeps

(2010) H. Chen et al.   GENOME RESEARCH

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Gene expression profiling in skeletal muscle of Holstein-Friesian bulls with single-nucleotide polymorphism in the myostatin gene 5’-flanking region

(2010) Tomasz Sadkowski et al.   JOURNAL OF APPLIED GENETICS

A Complete Mitochondrial Genome Sequence from a Mesolithic Wild Aurochs (Bos primigenius)

(2010) Ceiridwen J. Edwards et al.   PLoS One

Genetic heterogeneity at the bovineKITgene in cattle breeds carrying different putative alleles at thespottinglocus

(2009) L. Fontanesi et al.   ANIMAL GENETICS

A whole genome Bayesian scan for adaptive genetic divergence in West African cattle

(2009) Mathieu Gautier et al.   BMC GENOMICS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Zebu Cattle Are an Exclusive Legacy of the South Asia Neolithic

(2009) S. Chen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Runs of Homozygosity in European Populations

(2008) Ruth McQuillan et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Microsatellite analysis reveals high genetic diversity but low genetic structure in Ethiopian indigenous cattle populations

(2008) H. Dadi et al.   ANIMAL GENETICS

Correlating Bayesian date estimates with climatic events and domestication using a bovine case study

(2008) S. Y.W Ho et al.   Biology Letters

STING is an endoplasmic reticulum adaptor that facilitates innate immune signalling

(2008) Hiroki Ishikawa et al.   NATURE