Sequence-based methods for detecting and evaluating the human gut mycobiome

Fungi inhabiting the healthy human gastrointestinal tract: a diverse and dynamic community

(2015) Heather E. Hallen-Adams et al.   Fungal Ecology

The human gut mycobiome: pitfalls and potentials--a mycologists perspective

(2015) M. J. Suhr et al.   MYCOLOGIA

Redefining the Human Oral Mycobiome with Improved Practices in Amplicon-based Taxonomy: Discovery of Malassezia as a Prominent Commensal

(2014) Amanda K. Dupuy et al.   PLoS One

Striking a balance: fungal commensalism versus pathogenesis

(2013) Iliyan D Iliev et al.   CURRENT OPINION IN MICROBIOLOGY

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

Diet rapidly and reproducibly alters the human gut microbiome

(2013) Lawrence A. David et al.   NATURE

Topographic diversity of fungal and bacterial communities in human skin

(2013) Keisha Findley et al.   NATURE

Plant and Fungal Diversity in Gut Microbiota as Revealed by Molecular and Culture Investigations

(2013) Nina Gouba et al.   PLoS One

Archaea and Fungi of the Human Gut Microbiome: Correlations with Diet and Bacterial Residents

(2013) Christian Hoffmann et al.   PLoS One

Molecular Identification and Characterization of Ileal and Cecal Fungus Communities in Broilers Given Probiotics, Specific Essential Oil Blends, and Under Mixed Eimeria Infection

(2012) Michael E. Hume et al.   Foodborne Pathogens and Disease

Use of 18S ribosomal DNA polymerase chain reaction–denaturing gradient gel electrophoresis to study composition of fungal community in 2 patients with intestinal transplants

(2012) Qiurong Li et al.   HUMAN PATHOLOGY

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

Molecular Detection of Eukaryotes in a Single Human Stool Sample from Senegal

(2012) Ibrahim Hamad et al.   PLoS One

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi

(2012) C. L. Schoch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evaluation of Luminex xTAG Fungal Analyte-Specific Reagents for Rapid Identification of Clinically Relevant Fungi

(2011) N. Esther Babady et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Correlation between gastrointestinal fungi and varying degrees of chronic hepatitis B virus infection

(2010) Yu Chen et al.   DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE

Quantifying microbial communities with 454 pyrosequencing: does read abundance count?

(2010) ANTHONY S. AMEND et al.   MOLECULAR ECOLOGY

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases

(2010) Leho Tedersoo et al.   NEW PHYTOLOGIST

Resistant Starches Types 2 and 4 Have Differential Effects on the Composition of the Fecal Microbiota in Human Subjects

(2010) Inés Martínez et al.   PLoS One

Evaluation of the bacterial diversity in the feces of cattle using 16S rDNA bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP)

(2008) Scot E Dowd et al.   BMC MICROBIOLOGY

Micro-eukaryotic diversity of the human distal gut microbiota: qualitative assessment using culture-dependent and -independent analysis of faeces

(2008) Pauline D Scanlan et al.   ISME Journal

Fungi and inflammatory bowel diseases: Alterations of composition and diversity

(2008) Stephan J. Ott et al.   SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY