IPs-GRUAtt: An attention-based bidirectional gated recurrent unit network for predicting phosphorylation sites of SARS-CoV-2 infection

SARS-CoV-2 Infection Triggers Phosphorylation: Potential Target for Anti-COVID-19 Therapeutics

(2022) Bhaswati Chatterjee et al.   Frontiers in Immunology

Human phospho‐signaling networks of SARS‐CoV‐2 infection are rewired by population genetic variants

(2022) Diogo Pellegrina et al.   Molecular Systems Biology

Structural basis for SARS-CoV-2 nucleocapsid (N) protein recognition by 14-3-3 proteins

(2022) Andrea Eisenreichova et al.   JOURNAL OF STRUCTURAL BIOLOGY

The Mechanism of SARS-CoV-2 Nucleocapsid Protein Recognition by the Human 14-3-3 Proteins

(2021) Kristina V. Tugaeva et al.   JOURNAL OF MOLECULAR BIOLOGY

mRNALocater: Enhance the prediction accuracy of eukaryotic mRNA subcellular localization by using model fusion strategy

(2021) Qiang Tang et al.   MOLECULAR THERAPY

Multilevel proteomics reveals host perturbations by SARS-CoV-2 and SARS-CoV

(2021) Alexey Stukalov et al.   NATURE

Novel inhibitors to ADP ribose phosphatase of SARS-CoV-2 identified by structure-based high throughput virtual screening and molecular dynamics simulations

(2021) Dhrumi C. Patel et al.   COMPUTERS IN BIOLOGY AND MEDICINE

Assessing the impact of minor modifications on the interior structure of GRU: GRU1 and GRU2

(2021) Gulsum Yigit et al.   CONCURRENCY AND COMPUTATION-PRACTICE & EXPERIENCE

Machine intelligence in peptide therapeutics: A next‐generation tool for rapid disease screening

(2020) Shaherin Basith et al.   MEDICINAL RESEARCH REVIEWS

A SARS-CoV-2 protein interaction map reveals targets for drug repurposing

(2020) David E. Gordon et al.   NATURE

MusiteDeep: a deep-learning based webserver for protein post-translational modification site prediction and visualization

(2020) Duolin Wang et al.   NUCLEIC ACIDS RESEARCH

The Landscape of Human Cancer Proteins Targeted by SARS-CoV-2

(2020) Beril Tutuncuoglu et al.   Cancer Discovery

Growth factor receptor signaling inhibition prevents SARS-CoV-2 replication

(2020) Kevin Klann et al.   MOLECULAR CELL

Evolution of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) as coronavirus disease 2019 (COVID-19) pandemic: A global health emergency

(2020) Thamina Acter et al.   SCIENCE OF THE TOTAL ENVIRONMENT

High throughput discovery of functional protein modifications by Hotspot Thermal Profiling

(2019) Jun X. Huang et al.   NATURE METHODS

Impact of fully connected layers on performance of convolutional neural networks for image classification

(2019) S.H. Shabbeer Basha et al.   NEUROCOMPUTING

DeepPhos: prediction of protein phosphorylation sites with deep learning

(2018) Fenglin Luo et al.   BIOINFORMATICS

PhosphoPredict: A bioinformatics tool for prediction of human kinase-specific phosphorylation substrates and sites by integrating heterogeneous feature selection

(2017) Jiangning Song et al.   Scientific Reports

RF-Phos: A Novel General Phosphorylation Site Prediction Tool Based on Random Forest

(2016) Hamid D. Ismail et al.   Biomed Research International

PhosphoSVM: prediction of phosphorylation sites by integrating various protein sequence attributes with a support vector machine

(2014) Yongchao Dou et al.   AMINO ACIDS

Representation Learning: A Review and New Perspectives

(2013) Y. Bengio et al.   IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

The importance of post-translational modifications in regulating Saccharomyces cerevisiae metabolism

(2011) Ana Paula Oliveira et al.   FEMS YEAST RESEARCH

Musite, a Tool for Global Prediction of General and Kinase-specific Phosphorylation Sites

(2010) Jianjiong Gao et al.   MOLECULAR & CELLULAR PROTEOMICS