A draft of the genome of the Gulf Coast tick, Amblyomma maculatum

Established Population of the Gulf Coast Tick, Amblyomma maculatum (Acari: Ixodidae), Infected with Rickettsia parkeri (Rickettsiales: Rickettsiaceae), in Connecticut

(2021) Goudarz Molaei et al.   JOURNAL OF MEDICAL ENTOMOLOGY

Transposable element-derived sequences in vertebrate development

(2021) Ema Etchegaray et al.   Mobile DNA

Twelve years of SAMtools and BCFtools

(2021) Petr Danecek et al.   GigaScience

Established Populations of Rickettsia parkeri-Infected Amblyomma maculatum Ticks in New York City, New York, USA

(2021) José R. Ramírez-Garofalo et al.   VECTOR-BORNE AND ZOONOTIC DISEASES

Surveillance for Amblyomma maculatum (Acari: Ixodidae) and Rickettsia parkeri (Rickettsiales: Rickettsiaceae) in the State of Delaware, and Their Public Health Implications

(2020) Lauren P Maestas et al.   JOURNAL OF MEDICAL ENTOMOLOGY

IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

(2020) Bui Quang Minh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Semisynthesis of an evasin from tick saliva reveals a critical role of tyrosine sulfation for chemokine binding and inhibition

(2020) Charlotte Franck et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Blood Digestion by Trypsin-Like Serine Proteases in the Replete Lyme Disease Vector Tick, Ixodes scapularis

(2020) Jeremiah Reyes et al.   Insects

Integrated analysis of sialotranscriptome and sialoproteome of the brown dog tick Rhipicephalus sanguineus (s.l.): Insights into gene expression during blood feeding

(2020) Lucas Tirloni et al.   Journal of Proteomics

TickSialoFam (TSFam): A Database That Helps to Classify Tick Salivary Proteins, a Review on Tick Salivary Protein Function and Evolution, With Considerations on the Tick Sialome Switching Phenomenon

(2020) José M. C. Ribeiro et al.   Frontiers in Cellular and Infection Microbiology

Evolution of pogo, a separate superfamily of IS630-Tc1-mariner transposons, revealing recurrent domestication events in vertebrates

(2020) Bo Gao et al.   Mobile DNA

Large-Scale Comparative Analyses of Tick Genomes Elucidate Their Genetic Diversity and Vector Capacities

(2020) Na Jia et al.   CELL

A physiologic overview of the organ-specific transcriptome of the cattle tick Rhipicephalus microplus

(2020) Lucas Tirloni et al.   Scientific Reports

Discovery of Alpha-Gal-Containing Antigens in North American Tick Species Believed to Induce Red Meat Allergy

(2019) Gary Crispell et al.   Frontiers in Immunology

Mutation Rate Heterogeneity Increases Odds of Survival in Unpredictable Environments

(2019) Ivan Matic   MOLECULAR CELL

CDD/SPARCLE: the conserved domain database in 2020

(2019) Shennan Lu et al.   NUCLEIC ACIDS RESEARCH

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

HMMER web server: 2018 update

(2018) Simon C Potter et al.   NUCLEIC ACIDS RESEARCH

Tick galactosyltransferases are involved in α-Gal synthesis and play a role during Anaplasma phagocytophilum infection and Ixodes scapularis tick vector development

(2018) Alejandro Cabezas-Cruz et al.   Scientific Reports

The tick endosymbiont Candidatus Midichloria mitochondrii and selenoproteins are essential for the growth of Rickettsia parkeri in the Gulf Coast tick vector

(2018) Khemraj Budachetri et al.   Microbiome

Vector Tick Transmission Model of Spotted Fever Rickettsiosis

(2018) Tais B. Saito et al.   AMERICAN JOURNAL OF PATHOLOGY

Direct determination of diploid genome sequences

(2017) Neil I. Weisenfeld et al.   GENOME RESEARCH

Catalase is a determinant of the colonization and transovarial transmission of Rickettsia parkeri in the Gulf Coast tick Amblyomma maculatum

(2017) K. Budachetri et al.   INSECT MOLECULAR BIOLOGY

UFBoot2: Improving the Ultrafast Bootstrap Approximation

(2017) Diep Thi Hoang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Tyrosine sulfation modulates activity of tick-derived thrombin inhibitors

(2017) Robert E. Thompson et al.   Nature Chemistry

ModelFinder: fast model selection for accurate phylogenetic estimates

(2017) Subha Kalyaanamoorthy et al.   NATURE METHODS

Ticks, Ixodes scapularis, Feed Repeatedly on White-Footed Mice despite Strong Inflammatory Response: An Expanding Paradigm for Understanding Tick–Host Interactions

(2017) Jennifer M. Anderson et al.   Frontiers in Immunology

Genomic insights into the Ixodes scapularis tick vector of Lyme disease

(2016) Monika Gulia-Nuss et al.   Nature Communications

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

The Dfam database of repetitive DNA families

(2015) Robert Hubley et al.   NUCLEIC ACIDS RESEARCH

Twenty years of theMEROPSdatabase of proteolytic enzymes, their substrates and inhibitors

(2015) Neil D. Rawlings et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database: towards a more sustainable future

(2015) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Next-generation sequencing as means to retrieve tick systematic markers, with the focus on Nuttalliella namaqua (Ixodoidea: Nuttalliellidae)

(2015) Ben J. Mans et al.   Ticks and Tick-Borne Diseases

Extreme Recombination Frequencies Shape Genome Variation and Evolution in the Honeybee, Apis mellifera

(2015) Andreas Wallberg et al.   PLoS Genetics

Evolution of Genome Size and Complexity in the Rhabdoviridae

(2015) Peter J. Walker et al.   PLoS Pathogens

An Insight Into the Microbiome of theAmblyomma maculatum(Acari: Ixodidae)

(2014) Khemraj Budachetri et al.   JOURNAL OF MEDICAL ENTOMOLOGY

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Knockdown of Selenocysteine-Specific Elongation Factor in Amblyomma maculatum Alters the Pathogen Burden of Rickettsia parkeri with Epigenetic Control by the Sin3 Histone Deacetylase Corepressor Complex

(2013) Steven W. Adamson et al.   PLoS One

Widespread horizontal transfer of retrotransposons

(2013) A. M. Walsh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic evidence for elevated mutation rates in highly expressed genes

(2012) Chungoo Park et al.   EMBO REPORTS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Variation in the mutation rate across mammalian genomes

(2011) Alan Hodgkinson et al.   NATURE REVIEWS GENETICS

Prolyl 4-hydroxylase

(2010) Kelly L. Gorres et al.   CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY

Neuropeptide signaling sequences identified by pyrosequencing of the American dog tick synganglion transcriptome during blood feeding and reproduction

(2010) Kevin V. Donohue et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

Hemoglobin Digestion in Blood-Feeding Ticks: Mapping a Multipeptidase Pathway by Functional Proteomics

(2009) Martin Horn et al.   CHEMISTRY & BIOLOGY

Rickettsia parkeriRickettsiosis and Its Clinical Distinction from Rocky Mountain Spotted Fever

(2008) Christopher D. Paddock et al.   CLINICAL INFECTIOUS DISEASES