How predictable is adaptation from standing genetic variation? Experimental evolution in Drosophila highlights the central role of redundancy and linkage disequilibrium

Pleiotropy facilitates parallel adaptation in sticklebacks

(2022) Diana J. Rennison et al.   MOLECULAR ECOLOGY

Direct observation of adaptive tracking on ecological time scales in Drosophila

(2022) Seth M. Rudman et al.   SCIENCE

Genomic basis of parallel adaptation varies with divergence in Arabidopsis and its relatives

(2021) Magdalena Bohutínská et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phenotypic and genotypic parallel evolution in parapatric ecotypes of Senecio

(2021) Maddie E. James et al.   EVOLUTION

Highly Parallel Genomic Selection Response in Replicated Drosophila melanogaster Populations with Reduced Genetic Variation

(2021) Claire Burny et al.   Genome Biology and Evolution

Evolution of phenotypic variance in response to a novel hot environment

(2021) Wei‐Yun Lai et al.   MOLECULAR ECOLOGY

Rapid sex-specific adaptation to high temperature in Drosophila

(2020) Sheng-Kai Hsu et al.   eLife

Distinct patterns of selective sweep and polygenic adaptation in evolve and re-sequence studies

(2020) Neda Barghi et al.   Genome Biology and Evolution

Neuronal function and dopamine signaling evolve at high temperature in Drosophila

(2020) Ana Marija Jakšić et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Importance of Genetic Redundancy in Evolution

(2020) Áki J. Láruson et al.   TRENDS IN ECOLOGY & EVOLUTION

Polygenic adaptation: a unifying framework to understand positive selection

(2020) Neda Barghi et al.   NATURE REVIEWS GENETICS

The evolution of phenotypic plasticity in response to temperature stress

(2020) Francois Mallard et al.   Genome Biology and Evolution

Genetic redundancy fuels polygenic adaptation in Drosophila

(2019) Neda Barghi et al.   PLOS BIOLOGY

Parallel adaptation of rabbit populations to myxoma virus

(2019) Joel M. Alves et al.   SCIENCE

How phenotypic convergence arises in experimental evolution

(2019) Pedro Simões et al.   EVOLUTION

Thinking About the Evolution of Complex Traits in the Era of Genome-Wide Association Studies

(2019) Guy Sella et al.   Annual Review of Genomics and Human Genetics

The population genetics of crypsis in vertebrates: recent insights from mice, hares, and lizards

(2019) Rebecca B. Harris et al.   HEREDITY

Natural selection on the Arabidopsis thaliana genome in present and future climates

(2019) Moises Exposito-Alonso et al.   NATURE

Introgression of a Block of Genome Under Infinitesimal Selection

(2018) Himani Sachdeva et al.   GENETICS

Introgression of a Block of Genome Under Infinitesimal Selection

(2018) Himani Sachdeva et al.   GENETICS

(Non)Parallel Evolution

(2018) Daniel I. Bolnick et al.   Annual Review of Ecology Evolution and Systematics

Replicability of Introgression Under Linked, Polygenic Selection

(2018) Himani Sachdeva et al.   GENETICS

Different Genomic Changes Underlie Adaptive Evolution in Populations of Contrasting History

(2017) Sofia G Seabra et al.   MOLECULAR BIOLOGY AND EVOLUTION

Predicting evolution

(2017) Michael Lässig et al.   Nature Ecology & Evolution

Genomic Trajectories to Desiccation Resistance: Convergence and Divergence Among Replicate Selected Drosophila Lines

(2016) Philippa C. Griffin et al.   GENETICS

Convergent local adaptation to climate in distantly related conifers

(2016) S. Yeaman et al.   SCIENCE

Experimental Evolution of Gene Expression and Plasticity in Alternative Selective Regimes

(2016) Yuheng Huang et al.   PLoS Genetics

Genomic Trajectories to Desiccation Resistance: Convergence and Divergence Among Replicate Selected Drosophila Lines

(2016) Philippa C. Griffin et al.   GENETICS

Genome-wide analysis of long-term evolutionary domestication in Drosophila melanogaster

(2016) Mark A. Phillips et al.   Scientific Reports

Extent of QTL Reuse During Repeated Phenotypic Divergence of Sympatric Threespine Stickleback

(2015) G. L. Conte et al.   GENETICS

Elucidating the molecular architecture of adaptation via evolve and resequence experiments

(2015) Anthony Long et al.   NATURE REVIEWS GENETICS

Combining experimental evolution with next-generation sequencing: a powerful tool to study adaptation from standing genetic variation

(2014) C Schlötterer et al.   HEREDITY

A predictive fitness model for influenza

(2014) Marta Łuksza et al.   NATURE

Sequencing pools of individuals — mining genome-wide polymorphism data without big funding

(2014) Christian Schlötterer et al.   NATURE REVIEWS GENETICS

Laboratory Selection Quickly Erases Historical Differentiation

(2014) Inês Fragata et al.   PLoS One

Host adaptation to viruses relies on few genes with different cross-resistance properties

(2014) N. E. Martins et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Molecular Diversity of Adaptive Convergence

(2012) O. Tenaillon et al.   SCIENCE

Establishment of new mutations under divergence and genome hitchhiking

(2011) J. L. Feder et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Genome-wide analysis of a long-term evolution experiment with Drosophila

(2010) Molly K. Burke et al.   NATURE

Sequencing of 50 Human Exomes Reveals Adaptation to High Altitude

(2010) X. Yi et al.   SCIENCE

Identifying Signatures of Natural Selection in Tibetan and Andean Populations Using Dense Genome Scan Data

(2010) Abigail Bigham et al.   PLoS Genetics

Experimental evolution reveals natural selection on standing genetic variation

(2009) Henrique Teotónio et al.   NATURE GENETICS

Optimization of gene expression by natural selection

(2009) T. Bedford et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA