MDSi: Multi-omics Database for Setaria italica

Multi-omics analyses of 398 foxtail millet accessions reveal genomic regions associated with domestication, metabolite traits, and anti-inflammatory effects

(2022) Xukai Li et al.   Molecular Plant

GWAS, MWAS and mGWAS provide insights into precision agriculture based on genotype-dependent microbial effects in foxtail millet

(2022) Yayu Wang et al.   Nature Communications

The relationship between ecological factors and commercial quality of high-quality foxtail millet “Jingu 21”

(2022) Ke Ma et al.   FOOD RESEARCH INTERNATIONAL

De novo genome assembly of a foxtail millet cultivar Huagu11 uncovered the genetic difference to the cultivar Yugu1, and the genetic mechanism of imazethapyr tolerance

(2021) Jie Wang et al.   BMC PLANT BIOLOGY

A pan-genomic approach to genome databases using maize as a model system

(2021) Margaret R. Woodhouse et al.   BMC PLANT BIOLOGY

IC4R-2.0: Rice Genome Reannotation Using Massive RNA-seq Data

(2020) Jian Sang et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

ZEAMAP, a Comprehensive Database Adapted to the Maize Multi-Omics Era

(2020) Songtao Gui et al.   iScience

SorghumFDB: sorghum functional genomics database with multidimensional network analysis

(2016) Tian Tian et al.   Database-The Journal of Biological Databases and Curation

Assembling the Setaria italica L. Beauv. genome into nine chromosomes and insights into regions affecting growth and drought tolerance

(2016) Kevin J. Tsai et al.   Scientific Reports

SIFGD: Setaria italica Functional Genomics Database

(2015) Qi You et al.   Molecular Plant

FmTFDb: a foxtail millet transcription factors database for expediting functional genomics in millets

(2014) Venkata Suresh Bonthala et al.   MOLECULAR BIOLOGY REPORTS

Using GBrowse 2.0 to visualize and share next-generation sequence data

(2013) L. D. Stein   BRIEFINGS IN BIOINFORMATICS

CottonGen: a genomics, genetics and breeding database for cotton research

(2013) Jing Yu et al.   NUCLEIC ACIDS RESEARCH

Rice Annotation Project Database (RAP-DB): An Integrative and Interactive Database for Rice Genomics

(2013) Hiroaki Sakai et al.   PLANT AND CELL PHYSIOLOGY

FmMDb: A Versatile Database of Foxtail Millet Markers for Millets and Bioenergy Grasses Research

(2013) Venkata Suresh B et al.   PLoS One

Foxtail millet: a model crop for genetic and genomic studies in bioenergy grasses

(2012) Charu Lata et al.   CRITICAL REVIEWS IN BIOTECHNOLOGY

Reference genome sequence of the model plant Setaria

(2012) Jeffrey L Bennetzen et al.   NATURE BIOTECHNOLOGY

Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential

(2012) Gengyun Zhang et al.   NATURE BIOTECHNOLOGY

Early millet use in northern China

(2012) X. Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Setaria viridis and Setaria italica, model genetic systems for the Panicoid grasses

(2011) P. Li et al.   JOURNAL OF EXPERIMENTAL BOTANY

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

(2011) Philippe Lamesch et al.   NUCLEIC ACIDS RESEARCH

Setaria viridis: A Model for C4 Photosynthesis

(2010) T. P. Brutnell et al.   PLANT CELL

SoyBase, the USDA-ARS soybean genetics and genomics database

(2009) David Grant et al.   NUCLEIC ACIDS RESEARCH

Foxtail Millet: A Sequence-Driven Grass Model System

(2009) A. N. Doust et al.   PLANT PHYSIOLOGY