Genetic assimilation of ancestral plasticity during parallel adaptation to zinc contamination in Silene uniflora

Polygenic routes lead to parallel altitudinal adaptation in Heliosperma pusillum (Caryophyllaceae)

(2022) Aglaia Szukala et al.   MOLECULAR ECOLOGY

Gene expression plasticity and desert adaptation in house mice

(2021) Noëlle K. J. Bittner et al.   EVOLUTION

Nonparallel transcriptional divergence during parallel adaptation

(2021) Eva K. Fischer et al.   MOLECULAR ECOLOGY

Rapid Parallel Adaptation to Anthropogenic Heavy Metal Pollution

(2021) Alexander S T Papadopulos et al.   MOLECULAR BIOLOGY AND EVOLUTION

Adaptive and maladaptive expression plasticity underlying herbicide resistance in an agricultural weed

(2021) Emily B. Josephs et al.   Evolution Letters

Parallelism in eco-morphology and gene expression despite variable evolutionary and genomic backgrounds in a Holarctic fish

(2020) Arne Jacobs et al.   PLoS Genetics

The evolution of phenotypic plasticity in response to temperature stress

(2020) Francois Mallard et al.   Genome Biology and Evolution

Restoring ancestral phenotypes is a general pattern in gene expression evolution during adaptation to new environments in Tribolium castaneum

(2020) Eva L. Koch et al.   MOLECULAR ECOLOGY

Genetic compensation rather than genetic assimilation drives the evolution of plasticity in response to mild warming across latitudes in a damselfly

(2020) Janne Swaegers et al.   MOLECULAR ECOLOGY

Parallelism in gene expression between foothill and alpine ecotypes in Arabidopsis arenosa

(2020) Guillaume Wos et al.   PLANT JOURNAL

Phenotypic plasticity facilitates initial colonization of a novel environment

(2019) Sheng Pei Wang et al.   EVOLUTION

Genetic gene expression changes during environmental adaptations tend to reverse plastic changes even after the correction for statistical nonindependence

(2019) Wei-Chin Ho et al.   MOLECULAR BIOLOGY AND EVOLUTION

Adaptation to climate change through genetic accommodation and assimilation of plastic phenotypes

(2019) Morgan Kelly   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

PuHSFA4a Enhances Tolerance To Excess Zinc by Regulating Reactive Oxygen Species Production and Root Development in Populus

(2019) Haizhen Zhang et al.   PLANT PHYSIOLOGY

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

(2019) Daehwan Kim et al.   NATURE BIOTECHNOLOGY

The Evolution of Gene Expression Underlying Vision Loss in Cave Animals

(2018) David B Stern et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evolutionary adaptations to new environments generally reverse plastic phenotypic changes

(2018) Wei-Chin Ho et al.   Nature Communications

Morphological novelty emerges from pre-existing phenotypic plasticity

(2018) Nicholas A. Levis et al.   Nature Ecology & Evolution

(Non)Parallel Evolution

(2018) Daniel I. Bolnick et al.   Annual Review of Ecology Evolution and Systematics

Gene Regulatory Divergence Between Locally Adapted Ecotypes in Their Native Habitats

(2018) Billie A. Gould et al.   MOLECULAR ECOLOGY

Maladaptive phenotypic plasticity in cardiac muscle growth is suppressed in high‐altitude deer mice

(2018) Jonathan P. Velotta et al.   EVOLUTION

Repeated Evolution of Asexuality Involves Convergent Gene Expression Changes

(2018) Darren J Parker et al.   MOLECULAR BIOLOGY AND EVOLUTION

Signatures of selection in embryonic transcriptomes of lizards adapting in parallel to cool climate

(2017) Nathalie Feiner et al.   EVOLUTION

Heritable gene expression differences between lake and stream stickleback include both parallel and antiparallel components

(2017) D Hanson et al.   HEREDITY

Highly Expressed Genes Are Preferentially Co-Opted for C4 Photosynthesis

(2017) Jose J Moreno-Villena et al.   MOLECULAR BIOLOGY AND EVOLUTION

The roles of plasticity and evolutionary change in shaping gene expression variation in natural populations of extremophile fish

(2017) Courtney N. Passow et al.   MOLECULAR ECOLOGY

A Tissue-Mapped Axolotl De Novo Transcriptome Enables Identification of Limb Regeneration Factors

(2017) Donald M. Bryant et al.   Cell Reports

Canalization of gene expression is a major signature of regulatory cold adaptation in temperate Drosophila melanogaster

(2016) Korbinian von Heckel et al.   BMC GENOMICS

Enhanced cadmium accumulation and tolerance in transgenic tobacco overexpressing rice metal tolerance protein gene OsMTP1 is promising for phytoremediation

(2016) Natasha Das et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Experimental Evolution of Gene Expression and Plasticity in Alternative Selective Regimes

(2016) Yuheng Huang et al.   PLoS Genetics

Heavy Metal Tolerance in Plants: Role of Transcriptomics, Proteomics, Metabolomics, and Ionomics

(2016) Samiksha Singh et al.   Frontiers in Plant Science

Gene expression plasticity as a mechanism of coral adaptation to a variable environment

(2016) Carly D. Kenkel et al.   Nature Ecology & Evolution

Does plasticity enhance or dampen phenotypic parallelism? A test with three lake-stream stickleback pairs

(2015) K. B. Oke et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Plastic and Evolutionary Gene Expression Responses Are Correlated in European Grayling (Thymallus thymallus) Subpopulations Adapted to Different Thermal Environments

(2015) Hannu Mäkinen et al.   JOURNAL OF HEREDITY

Non-adaptive plasticity potentiates rapid adaptive evolution of gene expression in nature

(2015) Cameron K. Ghalambor et al.   NATURE

Association mapping reveals the role of purifying selection in the maintenance of genomic variation in gene expression

(2015) Emily B. Josephs et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Replaying the tape of life in the twenty-first century

(2015) Virginie Orgogozo   Interface Focus

SNPhylo: a pipeline to construct a phylogenetic tree from huge SNP data

(2014) Tae-Ho Lee et al.   BMC GENOMICS

Restriction and Recruitment—Gene Duplication and the Origin and Evolution of Snake Venom Toxins

(2014) Adam D. Hargreaves et al.   Genome Biology and Evolution

Overexpression of the glutathione S-transferase gene from Pyrus pyrifolia fruit improves tolerance to abiotic stress in transgenic tobacco plants

(2013) D. Liu et al.   MOLECULAR BIOLOGY

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

The genetic causes of convergent evolution

(2013) David L. Stern   NATURE REVIEWS GENETICS

Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions

(2013) Jaina Mistry et al.   NUCLEIC ACIDS RESEARCH

PHENOTYPIC PLASTICITY FACILITATES MUTATIONAL VARIANCE, GENETIC VARIANCE, AND EVOLVABILITY ALONG THE MAJOR AXIS OF ENVIRONMENTAL VARIATION

(2012) Jeremy A. Draghi et al.   EVOLUTION

Variation in plastic responses of a globally distributed picoplankton species to ocean acidification

(2012) Elisa Schaum et al.   Nature Climate Change

CONVERGENCE, ADAPTATION, AND CONSTRAINT

(2011) Jonathan B. Losos   EVOLUTION

The role of developmental plasticity in evolutionary innovation

(2011) A. P. Moczek et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Phenotypic plasticity facilitates recurrent rapid adaptation to introduced predators

(2010) A. G. Scoville et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Causes and evolutionary significance of genetic convergence

(2010) Pascal-Antoine Christin et al.   TRENDS IN GENETICS

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Adaptation to an extraordinary environment by evolution of phenotypic plasticity and genetic assimilation

(2009) R. LANDE   JOURNAL OF EVOLUTIONARY BIOLOGY

Seasonal and annual variations of metal uptake, bioaccumulation, and toxicity in Trifolium repens and Lolium perenne growing in a heavy metal-contaminated field

(2008) Géraldine Bidar et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH