Development of the maize 5.5K loci panel for genomic prediction through genotyping by target sequencing

Transcriptomic Variations and Network Hubs Controlling Seed Size and Weight During Maize Seed Development

(2022) Yanzhao Wang et al.   Frontiers in Plant Science

Multi-omics-based prediction of hybrid performance in canola

(2021) Dominic Knoch et al.   THEORETICAL AND APPLIED GENETICS

Association Mapping and Transcriptome Analysis Reveal the Genetic Architecture of Maize Kernel Size

(2021) Juan Ma et al.   Frontiers in Plant Science

Development and application of the Faba_bean_130K targeted next-generation sequencing SNP genotyping platform based on transcriptome sequencing

(2021) Chenyu Wang et al.   THEORETICAL AND APPLIED GENETICS

Development of GBTS and KASP Panels for Genetic Diversity, Population Structure, and Fingerprinting of a Large Collection of Broccoli (Brassica oleracea L. var. italica) in China

(2021) Yusen Shen et al.   Frontiers in Plant Science

Genetic Dissection of Grain Yield of Maize and Yield-Related Traits Through Association Mapping and Genomic Prediction

(2021) Juan Ma et al.   Frontiers in Plant Science

Genomic Prediction across Structured Hybrid Populations and Environments in Maize

(2021) Dongdong Li et al.   Plants-Basel

Genomic Prediction Using Low Density Marker Panels in Aquaculture: Performance Across Species, Traits, and Genotyping Platforms

(2020) Christina Kriaridou et al.   Frontiers in Genetics

Improvement of predictive ability in maize hybrids by including dominance effects and marker × environment models

(2020) Luís Felipe V. Ferrão et al.   CROP SCIENCE

Genomic prediction applied to multiple traits and environments in second season maize hybrids

(2020) Amanda Avelar de Oliveira et al.   HEREDITY

A new SNP genotyping technology Target SNP-seq and its application in genetic analysis of cucumber varieties

(2020) Jian Zhang et al.   Scientific Reports

Nonlinear kernels, dominance, and envirotyping data increase the accuracy of genome-based prediction in multi-environment trials

(2020) Germano Costa-Neto et al.   HEREDITY

Patterns of genome-wide allele-specific expression in hybrid rice and the implications on the genetic basis of heterosis

(2019) Lin Shao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bayesian analysis and prediction of hybrid performance

(2019) Filipe Couto Alves et al.   Plant Methods

Development of multiple SNP marker panels affordable to breeders through genotyping by target sequencing (GBTS) in maize

(2019) Zifeng Guo et al.   MOLECULAR BREEDING

Accurate prediction of maize grain yield using its contributing genes for gene-based breeding

(2019) Meiping Zhang et al.   GENOMICS

Hybrid Breeding of Rice via Genomic Selection

(2019) Yanru Cui et al.   PLANT BIOTECHNOLOGY JOURNAL

Multiplex restriction amplicon sequencing: a novel next‐generation sequencing‐based marker platform for high‐throughput genotyping

(2019) Amy Bernardo et al.   PLANT BIOTECHNOLOGY JOURNAL

Identification of quantitative trait loci for kernel-related traits and the heterosis for these traits in maize (Zea mays L.)

(2019) Yinghong Liu et al.   MOLECULAR GENETICS AND GENOMICS

Novel strategies for genomic prediction of untested single-cross maize hybrids using unbalanced historical data

(2019) K. O. G. Dias et al.   THEORETICAL AND APPLIED GENETICS

Improving accuracies of genomic predictions for drought tolerance in maize by joint modeling of additive and dominance effects in multi-environment trials

(2018) Kaio Olímpio Das Graças Dias et al.   HEREDITY

Genetic Diversity and Population Structure of F3:6 Nebraska Winter Wheat Genotypes Using Genotyping-By-Sequencing

(2018) Shamseldeen Eltaher et al.   Frontiers in Genetics

Kernel size‐related genes revealed by an integrated eQTL analysis during early maize kernel development

(2018) Junling Pang et al.   PLANT JOURNAL

Across-years prediction of hybrid performance in maize using genomics

(2018) Tobias A. Schrag et al.   THEORETICAL AND APPLIED GENETICS

Crop Breeding Chips and Genotyping Platforms: Progress, Challenges, and Perspectives

(2017) Awais Rasheed et al.   Molecular Plant

Conversion of array-based single nucleotide polymorphic markers for use in targeted genotyping by sequencing in hexaploid wheat (Triticum aestivum )

(2017) Amanda J. Burridge et al.   PLANT BIOTECHNOLOGY JOURNAL

The conserved and unique genetic architecture of kernel size and weight in maize and rice

(2017) Jie Liu et al.   PLANT PHYSIOLOGY

Analysis of the genetic architecture of maize ear and grain morphological traits by combined linkage and association mapping

(2017) Chaoshu Zhang et al.   THEORETICAL AND APPLIED GENETICS

Hybrid Performance of an Immortalized F2 Rapeseed Population Is Driven by Additive, Dominance, and Epistatic Effects

(2017) Peifa Liu et al.   Frontiers in Plant Science

Harnessing the power of RADseq for ecological and evolutionary genomics

(2016) Kimberly R. Andrews et al.   NATURE REVIEWS GENETICS

Genome-Wide SNP Calling from Genotyping by Sequencing (GBS) Data: A Comparison of Seven Pipelines and Two Sequencing Technologies

(2016) Davoud Torkamaneh et al.   PLoS One

Genome-based establishment of a high-yielding heterotic pattern for hybrid wheat breeding

(2015) Yusheng Zhao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-Wide Regression and Prediction with the BGLR Statistical Package

(2014) P. Perez et al.   GENETICS

Genome Wide Association Studies Using a New Nonparametric Model Reveal the Genetic Architecture of 17 Agronomic Traits in an Enlarged Maize Association Panel

(2014) Ning Yang et al.   PLoS Genetics

Genomic prediction of hybrid performance in maize with models incorporating dominance and population specific marker effects

(2012) Frank Technow et al.   THEORETICAL AND APPLIED GENETICS

Effectiveness of Genomic Prediction of Maize Hybrid Performance in Different Breeding Populations and Environments

(2012) Vanessa S. Windhausen et al.   G3-Genes Genomes Genetics

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

(2011) John W. Davey et al.   NATURE REVIEWS GENETICS

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH