4.6 Article

Vitamin C boosts DNA demethylation in TET2 mutation carriers

期刊

CLINICAL EPIGENETICS
卷 15, 期 1, 页码 -

出版社

BMC
DOI: 10.1186/s13148-022-01404-6

关键词

DNA methylation; TET2 mutations; Vitamin C; Hematological neoplasia

向作者/读者索取更多资源

Recent studies have shown that vitamin C can enhance the demethylation activity of the TET2 gene and reduce DNA hypermethylation. This suggests that vitamin C may play a role in preventing hematological malignancies in individuals with TET2 dysfunction.
Background Accurate regulation of DNA methylation is necessary for normal cells to differentiate, develop and function. TET2 catalyzes stepwise DNA demethylation in hematopoietic cells. Mutations in the TET2 gene predispose to hematological malignancies by causing DNA methylation overload and aberrant epigenomic landscape. Studies on mice and cell lines show that the function of TET2 is boosted by vitamin C. Thus, by strengthening the demethylation activity of TET2, vitamin C could play a role in the prevention of hematological malignancies in individuals with TET2 dysfunction. We recently identified a family with lymphoma predisposition where a heterozygous truncating germline mutation in TET2 segregated with nodular lymphocyte-predominant Hodgkin lymphoma. The mutation carriers displayed a hypermethylation pattern that was absent in the family members without the mutation.Methods In a clinical trial of 1 year, we investigated the effects of oral 1 g/day vitamin C supplementation on DNA methylation by analyzing genome-wide DNA methylation and gene expression patterns from the family members.Results We show that vitamin C reinforces the DNA demethylation cascade, reduces the proportion of hypermethylated loci and diminishes gene expression differences between TET2 mutation carriers and control individuals.Conclusions These results suggest that vitamin C supplementation increases DNA methylation turnover and provide a basis for further work to examine the potential benefits of vitamin C supplementation in individuals with germline and somatic TET2 mutations.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.6
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Article Genetics & Heredity

Novel germline variant in the histone demethylase and transcription regulator KDM4C induces a multi-cancer phenotype

Riku Katainen, Iikki Donner, Maritta Raisanen, Davide Berta, Anna Kuosmanen, Eevi Kaasinen, Marja Hietala, Lauri A. Aaltonen

Summary: This study identified a variant in the KDM4C gene that was associated with malignancy in an early-onset multi-cancer family, indicating a potential causal role of this mutation in cancer predisposition. Further analysis revealed dysregulation of H3K9 trimethylation and KDM4C-associated genes in individuals carrying the variant, supporting the hypothesis of its pathogenicity.

JOURNAL OF MEDICAL GENETICS (2022)

Article Biochemistry & Molecular Biology

A novel variant in SMG9 causes intellectual disability, confirming a role for nonsense-mediated decay components in neurocognitive development

Elisa Rahikkala, Lea Urpa, Bishwa Ghimire, Hande Topa, Mitja Kurki, Maryna Koskela, Mikko Airavaara, Eija Hamalainen, Katri Pylkas, Jarmo Korkko, Helena Savolainen, Anu Suoranta, Aida Bertoli-Avella, Arndt Rolfs, Pirkko Mattila, Mark Daly, Aarno Palotie, Olli Pietilainen, Jukka Moilanen, Outi Kuismin

Summary: Biallelic loss-of-function variants in the SMG9 gene cause heart and brain malformation syndrome. This study identified a novel pathogenic variant in SMG9 and demonstrated its impact on gene expression, although it had minimal effect on NMD.

EUROPEAN JOURNAL OF HUMAN GENETICS (2022)

Article Oncology

Truncating TINF2 p.Tyr312Ter variant and inherited breast cancer susceptibility

Susanna Koivuluoma, Sandra Vorimo, Tiina M. Mattila, Anna Tervasmaki, Timo Kumpula, Outi Kuismin, Robert Winqvist, Jukka Moilanen, Tuomo Mantere, Katri Pylkas

Summary: TINF2 is a critical subunit of the shelterin complex and its mutations are associated with dyskeratosis congenita and breast cancer susceptibility. This study identified a protein truncating variant in TINF2, which was found at a higher frequency in breast cancer cases compared to controls, but still fell within the range of moderate breast cancer risk alleles.

FAMILIAL CANCER (2023)

Article Biochemistry & Molecular Biology

Molecular subclass of uterine fibroids predicts tumor shrinkage in response to ulipristal acetate

Asa Kolterud, Niko Valimaki, Heli Kuisma, Joonatan Patomo, Sini T. Ilves, Netta Makinen, Jaana Kaukomaa, Kimmo Palin, Eevi Kaasinen, Auli Karhu, Annukka Pasanen, Ralf Butzow, Oskari Heikinheimo, Helena Kopp Kallner, Lauri A. Aaltonen

Summary: This study found that the treatment response of uterine fibroids is influenced by molecular subclasses, with MED12 mutant fibroids having a higher chance of shrinking after ulipristal acetate treatment compared to HMGA2 driven fibroids. Gene expression and DNA methylation analyses also revealed subclass specific differences in progesterone receptor signaling. These findings highlight the importance of considering genetic subclasses in evaluating uterine fibroid therapies.

HUMAN MOLECULAR GENETICS (2023)

Article Oncology

ATM c.7570G>C is a high-risk allele for breast cancer

Minna Kankuri-Tammilehto, Anna Tervasmaki, Minna Kraatari-Tiri, Elisa Rahikkala, Katri Pylkas, Outi Kuismin

Summary: ATM c.7570G>C variant is confirmed to co-segregate with breast cancer and is significantly associated with breast cancer in a non-selected breast cancer cohort from Northern Finland. This suggests that ATM c.7570G>C variant may be a high-risk allele for breast cancer.

INTERNATIONAL JOURNAL OF CANCER (2023)

Article Immunology

Long-term follow up of families with pathogenic NFKB1 variants reveals incomplete penetrance and frequent inflammatory sequelae

Elina A. Tuovinen, Outi Kuismin, Leila Soikkonen, Timi Martelius, Meri Kaustio, Sari Hamalainen, Hanna Viskari, Jaana Syrjanen, Ulla Wartiovaara-Kautto, Kari K. Eklund, Janna Saarela, Markku Varjosalo, Juha Kere, Timo Hautala, Mikko R. J. Seppanen

Summary: The NF-κB family of transcription factors is important in cellular signaling pathways, and NFKB1 variants have been associated with CVID and immunodeficiency. However, the penetrance and prevalence of CVID are relatively low, while inflammatory manifestations are more common.

CLINICAL IMMUNOLOGY (2023)

Article Biochemistry & Molecular Biology

Heterozygous and homozygous variants in STX1A cause a neurodevelopmental disorder with or without epilepsy

Johannes Luppe, Heinrich Sticht, Francois Lecoquierre, Alice Goldenberg, Kathleen M. Gorman, Ben Molloy, Emanuele Agolini, Antonio Novelli, Silvana Briuglia, Outi Kuismin, Carlo Marcelis, Antonio Vitobello, Anne-Sophie Denomme-Pichon, Sophie Julia, Johannes R. Lemke, Rami Abou Jamra, Konrad Platzer

Summary: The study identified eight individuals with ultra rare variants in STX1A who presented with a spectrum of intellectual disability, autism, and epilepsy. The phenotypic course varied depending on the type of variant, with missense variants mainly causing epilepsy and single amino acid deletions and the splice variant causing intellectual disability and autistic behavior. In silico modeling showed different impaired protein-protein interactions for missense variants and single amino acid deletions. These findings suggest two different pathogenic mechanisms underlying STX1A-related neurodevelopmental disorders.

EUROPEAN JOURNAL OF HUMAN GENETICS (2023)

Article Oncology

Evaluating the role of CHEK2 p.(Asp438Tyr) allele in inherited breast cancer predisposition

Timo A. Kumpula, Susanna Koivuluoma, Leila Soikkonen, Sandra Vorimo, Jukka Moilanen, Robert Winqvist, Tuomo Mantere, Outi Kuismin, Katri Pylkas

Summary: CHEK2 is a well-established breast cancer susceptibility gene, with the most frequent pathogenic variant being 1100delC, which confers a 2-fold risk for breast cancer. The rare variant CHEK2 c.1312 G > T, p (Asp438Tyr) in the kinase domain of the protein has unclear clinical significance for breast cancer predisposition due to its rarity.

FAMILIAL CANCER (2023)

Letter Immunology

CD40LG Triplication Associates with Immune Dysregulation and Exhaustion

Wenny Santaniemi, Nora Pernaa, Virpi Glumoff, Timo Hautala

JOURNAL OF CLINICAL IMMUNOLOGY (2023)

Article Genetics & Heredity

Deciphering colorectal cancer genetics through multi-omic analysis of 100,204 cases and 154,587 controls of European and east Asian ancestries

Ceres Fernandez-Rozadilla, Maria Timofeeva, Zhishan Chen, Philip Law, Minta Thomas, Stephanie Bien, Virginia Diez-Obrero, Li Li, Juan Fernandez-Tajes, Claire Palles, Kitty Sherwood, Sarah Harris, Victoria Svinti, Kevin McDonnell, Susan Farrington, James Studd, Peter Vaughan-Shaw, Xiao-ou Shu, Jirong Long, Qiuyin Cai, Xingyi Guo, Yingchang Lu, Peter Scacheri, James Studd, Jeroen Huyghe, Tabitha Harrison, David Shibata, Christopher Haiman, Mathew Devall, Fredrick Schumacher, Marilena Melas, Gad Rennert, Mireia Obon-Santacana, Vicente Martin-Sanchez, Ferran Moratalla-Navarro, Jae Hwan Oh, Jeongseon Kim, Sun Ha Jee, Keum Ji Jung, Sun-Seog Kweon, Min-Ho Shin, Aesun Shin, Yoon-Ok Ahn, Dong-Hyun Kim, Isao Oze, Wanqing Wen, Keitaro Matsuo, Koichi Matsuda, Chizu Tanikawa, Zefang Ren, Yu-Tang Gao, Wei-Hua Jia, John Potter, Mark Jenkins, Aung Ko Win, Rish Pai, Jane Figueiredo, Robert Haile, Steven Gallinger, Michael Woods, Polly Newcomb, David Shibata, Jeremy Cheadle, Richard Kaplan, Timothy Maughan, Rachel Kerr, David Kerr, Iva Kirac, Jan Boehm, Lukka-Pekka Mecklin, Pekka Jousilahti, Paul Knekt, Lauri Aaltonen, Harri Rissanen, Eero Pukkala, Johan Eriksson, Tatiana Cajuso, Ulrika Hanninen, Johanna Kondelin, Kimmo Palin, Tomas Tanskanen, Laura Renkonen-Sinisalo, Brent Zanke, Satu Mannisto, Demetrius Albanes, Stephanie Weinstein, Edward Ruiz-Narvaez, Julie Palmer, Daniel Buchanan, Elizabeth Platz, Kala Visvanathan, Cornelia Ulrich, Erin Siegel, Stefanie Brezina, Andrea Gsur, Peter Campbell, Jenny Chang-Claude, Michael Hoffmeister, Hermann Brenner, Martha Slattery, John Potter, Konstantinos Tsilidis, Matthias Schulze, Marc Gunter, Neil Murphy, Antoni Castells, Sergi Castellvi-Bel, Leticia Moreira, Volker Arndt, Anna Shcherbina, Mariana Stern, Bens Pardamean, Timothy Bishop, Graham Giles, Melissa Southey, Gregory Idos, Kevin McDonnell, Zomoroda Abu-Ful, Joel Greenson, Katerina Shulman, Flavio Lejbkowicz, Kenneth Offit, Yu-Ru Su, Robert Steinfelder, Temitope Keku, Bethany van Guelpen, Thomas Hudson, Heather Hampel, Rachel Pearlman, Sonja Berndt, Richard Hayes, Marie Elena Martinez, Sushma Thomas, Douglas Corley, Paul Pharoah, Susanna Larsson, Yun Yen, Heinz-Josef Lenz, Emily White, Li Li, Kimberly Doheny, Elizabeth Pugh, Tameka Shelford, Andrew Chan, Marcia Cruz-Correa, Annika Lindblom, David Shibata, Amit Joshi, Clemens Schafmayer, Peter Scacheri, Anshul Kundaje, Deborah Nickerson, Robert Schoen, Jochen Hampe, Zsofia Stadler, Pavel Vodicka, Ludmila Vodickova, Veronika Vymetalkova, Nickolas Papadopoulos, Chistopher Edlund, William Gauderman, Duncan Thomas, David Shibata, Amanda Toland, Sanford Markowitz, Andre Kim, Stephen Gruber, Franzel van Duijnhoven, Edith Feskens, Lori Sakoda, Manuela Gago-Dominguez, Alicja Wolk, Alessio Naccarati, Barbara Pardini, Liesel FitzGerald, Soo Chin Lee, Shuji Ogino, Stephanie Bien, Charles Kooperberg, Christopher Li, Yi Lin, Ross Prentice, Conghui Qu, Stephane Bezieau, Catherine Tangen, Elaine Mardis, Taiki Yamaji, Norie Sawada, Motoki Iwasaki, Christopher Haiman, Loic Le Marchand, Anna Wu, Chenxu Qu, Caroline McNeil, Gerhard Coetzee, Caroline Hayward, Ian Deary, Sarah Harris, Evropi Theodoratou, Stuart Reid, Marion Walker, Li Yin Ooi, Victor Moreno, Graham Casey, Stephen Gruber, Ian Tomlinson, Wei Zheng, Malcolm Dunlop, Richard Houlston, Ulrike Peters

Summary: This study identified 205 independent risk associations for colorectal cancer through a genome-wide association study meta-analysis. Transcriptome and methylome analysis further revealed 53 risk associations. These findings provide insights into the genetic and molecular mechanisms of colorectal oncogenesis and suggest potential targets for new treatment and prevention strategies.

NATURE GENETICS (2023)

Article Genetics & Heredity

Inherited mutations affecting the SRCAP complex are central in moderate-penetrance predisposition to uterine leiomyomas

Niko Valimaki, Vilja Jokinen, Tatiana Cajuso, Heli Kuisma, Aurora Taira, Olivia Dagnaud, Sini Ilves, Jaana Kaukomaa, Annukka Pasanen, Kimmo Palin, Oskari Heikinheimo, Ralf Butzow, Lauri A. Aaltonen, Auli Karhu

Summary: Uterine leiomyomas (ULs) are common benign smooth muscle tumors in premenopausal women. Variants in genes encoding subunits of the SRCAP complex (YEATS4, ZNHIT1, DMAP1, and ACTL6A) are significantly associated with ULs. These variants are linked to earlier diagnosis and hysterectomy. These findings establish the inactivation of SRCAP complex genes as a major contributor to moderate-penetrance UL predisposition.

AMERICAN JOURNAL OF HUMAN GENETICS (2023)

Article Gastroenterology & Hepatology

Genome-Wide Association Study Identifies 4 Novel Risk Loci for Small Intestinal Neuroendocrine Tumors Including a Missense Mutation in LGR5

Anil K. Giri, Mervi Aavikko, Linnea Wartiovaara, Toni Lemmetyinen, Juha Karjalainen, Juha Mehtonen, Kimmo Palin, Niko Valimaki, Max Tamlander, Riikka Saikkonen, Auli Karhu, Ekaterina Morgunova, Benjamin Sun, Heiko Runz, Priit Palta, Shuang Luo, Heikki Joensuu, Tomi P. Makela, Iiro Kostiainen, Camilla Schalin-Jantti, Aarno FinnGen, Aarno Palotie, Lauri A. Aaltonen, Saara Ollila, Mark J. Daly

Summary: This study is the largest genome-wide association study on small intestinal neuroendocrine tumors (SI-NETs) to date, and it identified 6 significant loci associated with SI-NET risk. Four of these loci are novel, and one of the top hits is a missense variant in the LGR5 gene, a marker of adult intestinal stem cells.

GASTROENTEROLOGY (2023)

Article Genetics & Heredity

Mutation-Attention (MuAt): deep representation learning of somatic mutations for tumour typing and subtyping

Prima Sanjaya, Katri Maljanen, Riku Katainen, Sebastian A. Waszak, Lauri O. Aaltonen, Oliver Stegle, Jan Korbel, Esa Pitkaenen

Summary: This study introduces a deep neural network called Mutation-Attention (MuAt) that can learn representations of simple and complex somatic alterations for prediction of tumour types and subtypes. By utilizing the attention mechanism on individual mutations, MuAt models achieved high prediction accuracy on whole genomes and exomes. Furthermore, MuAt models were able to learn clinically and biologically relevant tumour entities, potentially impacting precision cancer medicine.

GENOME MEDICINE (2023)

暂无数据