A comprehensive single-cell map of T cell exhaustion-associated immune environments in human breast cancer
出版年份 2023 全文链接
标题
A comprehensive single-cell map of T cell exhaustion-associated immune environments in human breast cancer
作者
关键词
-
出版物
Nature Communications
Volume 14, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2023-01-06
DOI
10.1038/s41467-022-35238-w
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Multiplexed imaging mass cytometry of the chemokine milieus in melanoma characterizes features of the response to immunotherapy
- (2022) Tobias Hoch et al. Science Immunology
- Single-Cell Profiling to Explore Immunological Heterogeneity of Tumor Microenvironment in Breast Cancer
- (2021) Xiao Yuan et al. Frontiers in Immunology
- Single-cell dissection of cellular components and interactions shaping the tumor immune phenotypes in ovarian cancer
- (2021) Milena Hornburg et al. CANCER CELL
- A single-cell map of intratumoral changes during anti-PD1 treatment of patients with breast cancer
- (2021) Ayse Bassez et al. NATURE MEDICINE
- Single-cell analyses reveal key immune cell subsets associated with response to PD-L1 blockade in triple-negative breast cancer
- (2021) Yuanyuan Zhang et al. CANCER CELL
- Immunotherapy for nonsmall cell lung cancer: a new therapeutic algorithm
- (2020) Thierry Berghmans et al. EUROPEAN RESPIRATORY JOURNAL
- The single-cell pathology landscape of breast cancer
- (2020) Hartland W. Jackson et al. NATURE
- CellPhoneDB: inferring cell–cell communication from combined expression of multi-subunit ligand–receptor complexes
- (2020) Mirjana Efremova et al. Nature Protocols
- Characterizing the Dysfunctional NK Cell: Assessing the Clinical Relevance of Exhaustion, Anergy, and Senescence
- (2020) Sean J. Judge et al. Frontiers in Cellular and Infection Microbiology
- A conserved dendritic-cell regulatory program limits antitumour immunity
- (2020) Barbara Maier et al. NATURE
- SingleCellSignalR: inference of intercellular networks from single-cell transcriptomics
- (2020) Simon Cabello-Aguilar et al. NUCLEIC ACIDS RESEARCH
- IFN-III is selectively produced by cDC1 and predicts good clinical outcome in breast cancer
- (2020) Margaux Hubert et al. Science Immunology
- A pan-cancer blueprint of the heterogeneous tumor microenvironment revealed by single-cell profiling
- (2020) Junbin Qian et al. CELL RESEARCH
- The Impact of Single-Cell Genomics on Adipose Tissue Research
- (2020) Alana Deutsch et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Cytotoxic CD8+ T cells in cancer and cancer immunotherapy
- (2020) Hans Raskov et al. BRITISH JOURNAL OF CANCER
- Pembrolizumab and atezolizumab in triple-negative breast cancer
- (2020) Dorota Kwapisz CANCER IMMUNOLOGY IMMUNOTHERAPY
- Prognostic value of tertiary lymphoid structure and tumour infiltrating lymphocytes in oral squamous cell carcinoma
- (2020) Qunxing Li et al. International Journal of Oral Science
- cytomapper: an R/Bioconductor package for visualization of highly multiplexed imaging data
- (2020) Nils Eling et al. BIOINFORMATICS
- A multicenter study benchmarking single-cell RNA sequencing technologies using reference samples
- (2020) Wanqiu Chen et al. NATURE BIOTECHNOLOGY
- Chemotherapy induces dynamic immune responses in breast cancers that impact treatment outcome
- (2020) Yeon Hee Park et al. Nature Communications
- A transcriptionally distinct CXCL13+CD103+CD8+ T-cell population is associated with B-cell recruitment and neoantigen load in human cancer
- (2019) Hagma H Workel et al. Cancer Immunology Research
- A Single-Cell Atlas of the Tumor and Immune Ecosystem of Human Breast Cancer
- (2019) Johanna Wagner et al. CELL
- Matrix metalloproteinases participation in the metastatic process and their diagnostic and therapeutic applications in cancer
- (2019) Georgina Gonzalez-Avila et al. CRITICAL REVIEWS IN ONCOLOGY HEMATOLOGY
- DoubletFinder: Doublet Detection in Single-Cell RNA Sequencing Data Using Artificial Nearest Neighbors
- (2019) Christopher S. McGinnis et al. Cell Systems
- Current Landscape of Immunotherapy in Breast Cancer
- (2019) Sylvia Adams et al. JAMA Oncology
- Comprehensive Integration of Single-Cell Data
- (2019) Tim Stuart et al. CELL
- TOX is a critical regulator of tumour-specific T cell differentiation
- (2019) Andrew C. Scott et al. NATURE
- ilastik: interactive machine learning for (bio)image analysis
- (2019) Stuart Berg et al. NATURE METHODS
- Role of immune checkpoint inhibitor-based therapies for metastatic renal cell carcinoma in the first-line setting: A Bayesian network analysis
- (2019) Junpeng Wang et al. EBioMedicine
- Landscape and Dynamics of Single Immune Cells in Hepatocellular Carcinoma
- (2019) Qiming Zhang et al. CELL
- A 40-Marker Panel for High Dimensional Characterization of Cancer Immune Microenvironments by Imaging Mass Cytometry
- (2019) Marieke E. Ijsselsteijn et al. Frontiers in Immunology
- Orchestrating single-cell analysis with Bioconductor
- (2019) Robert A. Amezquita et al. NATURE METHODS
- NicheNet: modeling intercellular communication by linking ligands to target genes
- (2019) Robin Browaeys et al. NATURE METHODS
- A descriptive marker gene approach to single-cell pseudotime inference
- (2018) Kieran R Campbell et al. BIOINFORMATICS
- Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics
- (2018) Kelly Street et al. BMC GENOMICS
- T Cell Dysfunction in Cancer
- (2018) Daniela S. Thommen et al. CANCER CELL
- Single-Cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment
- (2018) Elham Azizi et al. CELL
- The transition from HLA-I positive to HLA-I negative primary tumors: the road to escape from T-cell responses
- (2018) Natalia Aptsiauri et al. CURRENT OPINION IN IMMUNOLOGY
- Durable Complete Response After Discontinuation of Pembrolizumab in Patients With Metastatic Melanoma
- (2018) Caroline Robert et al. JOURNAL OF CLINICAL ONCOLOGY
- Tumour-infiltrating lymphocytes and prognosis in different subtypes of breast cancer: a pooled analysis of 3771 patients treated with neoadjuvant therapy
- (2018) Carsten Denkert et al. LANCET ONCOLOGY
- Single-cell profiling of breast cancer T cells reveals a tissue-resident memory subset associated with improved prognosis
- (2018) Peter Savas et al. NATURE MEDICINE
- Co-expression of CD39 and CD103 identifies tumor-reactive CD8 T cells in human solid tumors
- (2018) Thomas Duhen et al. Nature Communications
- IL-34 and CSF-1 display an equivalent macrophage differentiation ability but a different polarization potential
- (2018) Sonia Boulakirba et al. Scientific Reports
- CellProfiler 3.0: Next-generation image processing for biology
- (2018) Claire McQuin et al. PLOS BIOLOGY
- Clustering trees: a visualisation for evaluating clusterings at multiple resolutions
- (2018) Luke Zappia et al. GigaScience
- Compensation of Signal Spillover in Suspension and Imaging Mass Cytometry
- (2018) Stéphane Chevrier et al. Cell Systems
- Simultaneous Multiplexed Imaging of mRNA and Proteins with Subcellular Resolution in Breast Cancer Tissue Samples by Mass Cytometry
- (2018) Daniel Schulz et al. Cell Systems
- A Structured Tumor-Immune Microenvironment in Triple Negative Breast Cancer Revealed by Multiplexed Ion Beam Imaging
- (2018) Leeat Keren et al. CELL
- Presence of tertiary lymphoid structures determines the level of tumor-infiltrating lymphocytes in primary breast cancer and metastasis
- (2018) Miseon Lee et al. MODERN PATHOLOGY
- Tissue-Specific Roles of NKT Cells in Tumor Immunity
- (2018) Masaki Terabe et al. Frontiers in Immunology
- Defining T Cell States Associated with Response to Checkpoint Immunotherapy in Melanoma
- (2018) Moshe Sade-Feldman et al. CELL
- Lineage tracking reveals dynamic relationships of T cells in colorectal cancer
- (2018) Lei Zhang et al. NATURE
- Human breast tumor-infiltrating CD8+ T cells retain polyfunctionality despite PD-1 expression
- (2018) Colt A. Egelston et al. Nature Communications
- histoCAT: analysis of cell phenotypes and interactions in multiplex image cytometry data
- (2017) Denis Schapiro et al. NATURE METHODS
- Single-cell mRNA quantification and differential analysis with Census
- (2017) Xiaojie Qiu et al. NATURE METHODS
- Breast Cancer Neoantigens Can Induce CD8 + T-Cell Responses and Antitumor Immunity
- (2017) Xiuli Zhang et al. Cancer Immunology Research
- Tertiary Lymphoid Structures in Cancer: Drivers of Antitumor Immunity, Immunosuppression, or Bystander Sentinels in Disease?
- (2017) Emily Jayne Colbeck et al. Frontiers in Immunology
- Molecular Subtypes of Breast Cancer: Long-term Incidence Trends and Prognostic Differences
- (2016) M. Valla et al. CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION
- Patterns of Immune Infiltration in Breast Cancer and Their Clinical Implications: A Gene-Expression-Based Retrospective Study
- (2016) H. Raza Ali et al. PLOS MEDICINE
- Tertiary lymphoid structures are associated with higher tumor grade in primary operable breast cancer patients
- (2015) Stine L Figenschau et al. BMC CANCER
- Tertiary lymphoid structures: prognostic significance and relationship with tumour-infiltrating lymphocytes in triple-negative breast cancer
- (2015) Hee Jin Lee et al. JOURNAL OF CLINICAL PATHOLOGY
- The transcription factor BATF operates as an essential differentiation checkpoint in early effector CD8+ T cells
- (2014) Makoto Kurachi et al. NATURE IMMUNOLOGY
- Highly multiplexed imaging of tumor tissues with subcellular resolution by mass cytometry
- (2014) Charlotte Giesen et al. NATURE METHODS
- Cytotoxic T Lymphocytes Block Tumor Growth Both by Lytic Activity and IFN -Dependent Cell-Cycle Arrest
- (2014) H. Matsushita et al. Cancer Immunology Research
- The presence of programmed death 1 (PD-1)-positive tumor-infiltrating lymphocytes is associated with poor prognosis in human breast cancer
- (2013) S. Muenst et al. BREAST CANCER RESEARCH AND TREATMENT
- CD4+ follicular helper T cell infiltration predicts breast cancer survival
- (2013) Chunyan Gu-Trantien et al. JOURNAL OF CLINICAL INVESTIGATION
- Tumor-infiltrating follicular helper T cells: The new kids on the block
- (2013) Chunyan Gu-Trantien et al. OncoImmunology
- HBXIP upregulates CD46, CD55 and CD59 through ERK1/2/NF-κB signaling to protect breast cancer cells from complement attack
- (2012) Wenjing Cui et al. FEBS LETTERS
- TCR signaling via Tec kinase ITK and interferon regulatory factor 4 (IRF4) regulates CD8+ T-cell differentiation
- (2012) R. Nayar et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- CCL18 from Tumor-Associated Macrophages Promotes Breast Cancer Metastasis via PITPNM3
- (2011) Jingqi Chen et al. CANCER CELL
- Human Solid Tumors Contain High Endothelial Venules: Association with T- and B-Lymphocyte Infiltration and Favorable Prognosis in Breast Cancer
- (2011) L. Martinet et al. CANCER RESEARCH
- Improved Survival with Ipilimumab in Patients with Metastatic Melanoma
- (2010) F. Stephen Hodi et al. NEW ENGLAND JOURNAL OF MEDICINE
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
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