eggNOG 6.0: enabling comparative genomics across 12 535 organisms

PhyloCloud: an online platform for making sense of phylogenomic data

(2022) Ziqi Deng et al.   NUCLEIC ACIDS RESEARCH

GeCoViz: genomic context visualisation of prokaryotic genes from a functional and evolutionary perspective

(2022) Jorge Botas et al.   NUCLEIC ACIDS RESEARCH

Ten years of collaborative progress in the Quest for Orthologs

(2021) Benjamin Linard et al.   MOLECULAR BIOLOGY AND EVOLUTION

The carbohydrate-active enzyme database: functions and literature

(2021) Elodie Drula et al.   NUCLEIC ACIDS RESEARCH

PhylomeDB V5: an expanding repository for genome-wide catalogues of annotated gene phylogenies

(2021) Diego Fuentes et al.   NUCLEIC ACIDS RESEARCH

PANTHER version 16: a revised family classification, tree-based classification tool, enhancer regions and extensive API

(2020) Huaiyu Mi et al.   NUCLEIC ACIDS RESEARCH

RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach with protein family model curation

(2020) Wenjun Li et al.   NUCLEIC ACIDS RESEARCH

The Gene Ontology resource: enriching a GOld mine

(2020) et al.   NUCLEIC ACIDS RESEARCH

The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets

(2020) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

UniProt: the universal protein knowledgebase in 2021

(2020) et al.   NUCLEIC ACIDS RESEARCH

OrthoDB in 2020: evolutionary and functional annotations of orthologs

(2020) Evgeny M Zdobnov et al.   NUCLEIC ACIDS RESEARCH

20 years of the SMART protein domain annotation resource

(2017) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data

(2016) Jaime Huerta-Cepas et al.   MOLECULAR BIOLOGY AND EVOLUTION

Standardized benchmarking in the quest for orthologs

(2016) Adrian M Altenhoff et al.   NATURE METHODS

HieranoiDB: a database of orthologs inferred by Hieranoid

(2016) Mateusz Kaduk et al.   NUCLEIC ACIDS RESEARCH

KEGG: new perspectives on genomes, pathways, diseases and drugs

(2016) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Ensembl comparative genomics resources

(2016) Javier Herrero et al.   Database-The Journal of Biological Databases and Curation

Systematic humanization of yeast genes reveals conserved functions and genetic modularity

(2015) A. H. Kachroo et al.   SCIENCE

Functional and evolutionary implications of gene orthology

(2013) Toni Gabaldón et al.   NATURE REVIEWS GENETICS

SIMAP—the database of all-against-all protein sequence similarities and annotations with new interfaces and increased coverage

(2013) Roland Arnold et al.   NUCLEIC ACIDS RESEARCH

Interactive metagenomic visualization in a Web browser

(2011) Brian D Ondov et al.   BMC BIOINFORMATICS