DNA Data Bank of Japan (DDBJ) update report 2022

The OceanDNA MAG catalog contains over 50,000 prokaryotic genomes originated from various marine environments

(2022) Yosuke Nishimura et al.   Scientific Data

Highly accurate protein structure prediction with AlphaFold

(2021) John Jumper et al.   NATURE

GenBank

(2021) Eric W Sayers et al.   NUCLEIC ACIDS RESEARCH

DNA Data Bank of Japan (DDBJ) update report 2021

(2021) Toshihisa Okido et al.   NUCLEIC ACIDS RESEARCH

The European Nucleotide Archive in 2021

(2021) Carla Cummins et al.   NUCLEIC ACIDS RESEARCH

A proteomics sample metadata representation for multiomics integration and big data analysis

(2021) Chengxin Dai et al.   Nature Communications

VADR: validation and annotation of virus sequence submissions to GenBank

(2020) Alejandro A. Schäffer et al.   BMC BIOINFORMATICS

ArrayExpress update – from bulk to single-cell expression data

(2018) Awais Athar et al.   NUCLEIC ACIDS RESEARCH

DDBJ update: the Genomic Expression Archive (GEA) for functional genomics data

(2018) Yuichi Kodama et al.   NUCLEIC ACIDS RESEARCH

The European Genome-phenome Archive of human data consented for biomedical research

(2015) Ilkka Lappalainen et al.   NATURE GENETICS

The DDBJ Japanese Genotype-phenotype Archive for genetic and phenotypic human data

(2014) Yuichi Kodama et al.   NUCLEIC ACIDS RESEARCH

Toward richer metadata for microbial sequences: replacing strain-level NCBI taxonomy taxids with BioProject, BioSample and Assembly records

(2014) Scott Federhen et al.   Standards in Genomic Sciences

NCBI’s Database of Genotypes and Phenotypes: dbGaP

(2013) Kimberly A. Tryka et al.   NUCLEIC ACIDS RESEARCH

The sequence read archive: explosive growth of sequencing data

(2011) Y. Kodama et al.   NUCLEIC ACIDS RESEARCH