标题
Three‐dimensional chromatin re‐organization during muscle stem cell aging
作者
关键词
-
出版物
AGING CELL
Volume -, Issue -, Pages -
出版商
Wiley
发表日期
2023-02-02
DOI
10.1111/acel.13789
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Plotgardener: cultivating precise multi-panel figures in R
- (2022) Nicole E Kramer et al. BIOINFORMATICS
- Epigenetic control of muscle stem cells: time for a new dimension
- (2022) Valeria Bianconi et al. TRENDS IN GENETICS
- MyoD is a 3D genome structure organizer for muscle cell identity
- (2022) Ruiting Wang et al. Nature Communications
- An injury-responsive Rac-to-Rho GTPase switch drives activation of muscle stem cells through rapid cytoskeletal remodeling
- (2022) Allison P. Kann et al. Cell Stem Cell
- Dysregulated RNA processing and metabolism: a new hallmark of ageing and provocation for cellular senescence
- (2022) Lorna W. Harries FEBS Journal
- Neutrophil and natural killer cell imbalances prevent muscle stem cell–mediated regeneration following murine volumetric muscle loss
- (2022) Jacqueline A. Larouche et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Dynamics of CTCF- and cohesin-mediated chromatin looping revealed by live-cell imaging
- (2022) Michele Gabriele et al. SCIENCE
- Primary cilia on muscle stem cells are critical to maintain regenerative capacity and are lost during aging
- (2022) Adelaida R. Palla et al. Nature Communications
- Prolonged FOS activity disrupts a global myogenic transcriptional program by altering 3D chromatin architecture in primary muscle progenitor cells
- (2022) A. Rasim Barutcu et al. Skeletal Muscle
- Decoding the spatial chromatin organization and dynamic epigenetic landscapes of macrophage cells during differentiation and immune activation
- (2022) Da Lin et al. Nature Communications
- Analysis of human satellite cell dynamics on cultured adult skeletal muscle myofibers
- (2021) Peter Feige et al. Skeletal Muscle
- ArchR is a scalable software package for integrative single-cell chromatin accessibility analysis
- (2021) Jeffrey M. Granja et al. NATURE GENETICS
- Perspectives on skeletal muscle stem cells
- (2021) F. Relaix et al. Nature Communications
- Integrated analysis of multimodal single-cell data
- (2021) Yuhan Hao et al. CELL
- Chromatin and gene-regulatory dynamics of the developing human cerebral cortex at single-cell resolution
- (2021) Alexandro E. Trevino et al. CELL
- The loss of heterochromatin is associated with multiscale three-dimensional genome reorganization and aberrant transcription during cellular senescence
- (2021) Xianglin Zhang et al. GENOME RESEARCH
- Single-cell measurement of higher-order 3D genome organization with scSPRITE
- (2021) Mary V. Arrastia et al. NATURE BIOTECHNOLOGY
- Murine muscle stem cell response to perturbations of the neuromuscular junction are attenuated with aging
- (2021) Jacqueline A Larouche et al. eLife
- CRISPR/Cas9/AAV9-mediated in vivo editing identifies MYC regulation of 3D genome in skeletal muscle stem cell
- (2021) Liangqiang He et al. Stem Cell Reports
- CHD4 ensures stem cell lineage fidelity during skeletal muscle regeneration
- (2021) Krishnamoorthy Sreenivasan et al. Stem Cell Reports
- Sestrins regulate muscle stem cell metabolic homeostasis
- (2021) Benjamin A. Yang et al. Stem Cell Reports
- Control of satellite cell function in muscle regeneration and its disruption in ageing
- (2021) Pedro Sousa-Victor et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles
- (2021) Jaime A Castro-Mondragon et al. NUCLEIC ACIDS RESEARCH
- Galaxy HiCExplorer 3: a web server for reproducible Hi-C, capture Hi-C and single-cell Hi-C data analysis, quality control and visualization
- (2020) Joachim Wolff et al. NUCLEIC ACIDS RESEARCH
- pyGenomeTracks: reproducible plots for multivariate genomic data sets
- (2020) Lucille Lopez-Delisle et al. BIOINFORMATICS
- Circadian Regulation of Adult Stem Cell Homeostasis and Aging
- (2020) Salvador Aznar Benitah et al. Cell Stem Cell
- Dissecting Murine Muscle Stem Cell Aging through Regeneration Using Integrative Genomic Analysis
- (2020) Anna Shcherbina et al. Cell Reports
- KLF3 Mediates Epidermal Differentiation through the Epigenomic Writer CBP
- (2020) Jackson Jones et al. iScience
- Enhancer dependence of cell-type–specific gene expression increases with developmental age
- (2020) Wenqing Cai et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- ATAC-seq footprinting unravels kinetics of transcription factor binding during zygotic genome activation
- (2020) Mette Bentsen et al. Nature Communications
- The single-cell transcriptional landscape of mammalian organogenesis
- (2019) Junyue Cao et al. NATURE
- Oncogenic Notch Promotes Long-Range Regulatory Interactions within Hyperconnected 3D Cliques
- (2019) Jelena Petrovic et al. MOLECULAR CELL
- Single-cell analysis of adult skeletal muscle stem cells in homeostatic and regenerative conditions
- (2019) Stefania Dell'Orso et al. DEVELOPMENT
- Cell-autonomous and redundant roles of Hey1 and HeyL in muscle stem cells: HeyL requires Hes1 to bind diverse DNA sites
- (2019) Yu-taro Noguchi et al. DEVELOPMENT
- EGFR-Aurka Signaling Rescues Polarity and Regeneration Defects in Dystrophin-Deficient Muscle Stem Cells by Increasing Asymmetric Divisions
- (2019) Yu Xin Wang et al. Cell Stem Cell
- The Genetics of Aging: A Vertebrate Perspective
- (2019) Param Priya Singh et al. CELL
- The accessible chromatin landscape of the murine hippocampus at single-cell resolution
- (2019) John R. Sinnamon et al. GENOME RESEARCH
- WebGestalt 2019: gene set analysis toolkit with revamped UIs and APIs
- (2019) Yuxing Liao et al. NUCLEIC ACIDS RESEARCH
- DoubletFinder: Doublet Detection in Single-Cell RNA Sequencing Data Using Artificial Nearest Neighbors
- (2019) Christopher S. McGinnis et al. Cell Systems
- Comprehensive Integration of Single-Cell Data
- (2019) Tim Stuart et al. CELL
- Enhancer accessibility and CTCF occupancy underlie asymmetric TAD architecture and cell type specific genome topology
- (2019) Christopher Barrington et al. Nature Communications
- The ENCODE Blacklist: Identification of Problematic Regions of the Genome
- (2019) Haley M. Amemiya et al. Scientific Reports
- Wnt4 from the Niche Controls the Mechano-Properties and Quiescent State of Muscle Stem Cells
- (2019) Susan Eliazer et al. Cell Stem Cell
- Sustained expression of HeyL is critical for the proliferation of muscle stem cells in overloaded muscle
- (2019) Sumiaki Fukuda et al. eLife
- Fast, sensitive and accurate integration of single-cell data with Harmony
- (2019) Ilya Korsunsky et al. NATURE METHODS
- Spatial Genome Re-organization between Fetal and Adult Hematopoietic Stem Cells
- (2019) Changya Chen et al. Cell Reports
- Recovering Gene Interactions from Single-Cell Data Using Data Diffusion
- (2018) David van Dijk et al. CELL
- The Energetics and Physiological Impact of Cohesin Extrusion
- (2018) Laura Vian et al. CELL
- Clock-dependent chromatin topology modulates circadian transcription and behavior
- (2018) Jérôme Mermet et al. GENES & DEVELOPMENT
- Rev-erbα dynamically modulates chromatin looping to control circadian gene transcription
- (2018) Yong Hoon Kim et al. SCIENCE
- High-resolution TADs reveal DNA sequences underlying genome organization in flies
- (2018) Fidel Ramírez et al. Nature Communications
- Cicero Predicts cis-Regulatory DNA Interactions from Single-Cell Chromatin Accessibility Data
- (2018) Hannah A. Pliner et al. MOLECULAR CELL
- Muscle Satellite Cell Cross-Talk with a Vascular Niche Maintains Quiescence via VEGF and Notch Signaling
- (2018) Mayank Verma et al. Cell Stem Cell
- Dimensionality reduction for visualizing single-cell data using UMAP
- (2018) Etienne Becht et al. NATURE BIOTECHNOLOGY
- The Ubiquitin-Proteasome System Is Indispensable for the Maintenance of Muscle Stem Cells
- (2018) Yasuo Kitajima et al. Stem Cell Reports
- Transcriptional Signatures of Aging
- (2017) R. Stegeman et al. JOURNAL OF MOLECULAR BIOLOGY
- Myc Regulates Chromatin Decompaction and Nuclear Architecture during B Cell Activation
- (2017) Kyong-Rim Kieffer-Kwon et al. MOLECULAR CELL
- Two independent modes of chromatin organization revealed by cohesin removal
- (2017) Wibke Schwarzer et al. NATURE
- Single-nucleus Hi-C reveals unique chromatin reorganization at oocyte-to-zygote transition
- (2017) Ilya M. Flyamer et al. NATURE
- Notch1 and Notch2 Coordinately Regulate Stem Cell Function in the Quiescent and Activated States of Muscle Satellite Cells
- (2017) Shin Fujimaki et al. STEM CELLS
- A conserved KLF-autophagy pathway modulates nematode lifespan and mammalian age-associated vascular dysfunction
- (2017) Paishiun N. Hsieh et al. Nature Communications
- R-spondin1 Controls Muscle Cell Fusion through Dual Regulation of Antagonistic Wnt Signaling Pathways
- (2017) Floriane Lacour et al. Cell Reports
- A CREB-MPP7-AMOT Regulatory Axis Controls Muscle Stem Cell Expansion and Self-Renewal Competence
- (2017) Lydia Li et al. Cell Reports
- Cell-of-Origin-Specific 3D Genome Structure Acquired during Somatic Cell Reprogramming
- (2016) Peter Hugo Lodewijk Krijger et al. Cell Stem Cell
- deepTools2: a next generation web server for deep-sequencing data analysis
- (2016) Fidel Ramírez et al. NUCLEIC ACIDS RESEARCH
- KLF7 Regulates Satellite Cell Quiescence in Response to Extracellular Signaling
- (2016) Xiaobin Wang et al. STEM CELLS
- Klf5 regulates muscle differentiation by directly targeting muscle-specific genes in cooperation with MyoD in mice
- (2016) Shinichiro Hayashi et al. eLife
- Transcriptional and Chromatin Dynamics of Muscle Regeneration after Severe Trauma
- (2016) Carlos A. Aguilar et al. Stem Cell Reports
- Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments
- (2016) Neva C. Durand et al. Cell Systems
- Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom
- (2016) Neva C. Durand et al. Cell Systems
- Reorganization of chromosome architecture in replicative cellular senescence
- (2016) Steven W. Criscione et al. Science Advances
- ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization
- (2015) Guangchuang Yu et al. BIOINFORMATICS
- GenomicInteractions: An R/Bioconductor package for manipulating and investigating chromatin interaction data
- (2015) Nathan Harmston et al. BMC GENOMICS
- TRAF6 regulates satellite stem cell self-renewal and function during regenerative myogenesis
- (2015) Sajedah M. Hindi et al. JOURNAL OF CLINICAL INVESTIGATION
- Chromatin architecture reorganization during stem cell differentiation
- (2015) Jesse R. Dixon et al. NATURE
- Single-cell chromatin accessibility reveals principles of regulatory variation
- (2015) Jason D. Buenrostro et al. NATURE
- The central role of muscle stem cells in regenerative failure with aging
- (2015) Helen M Blau et al. NATURE MEDICINE
- limma powers differential expression analyses for RNA-sequencing and microarray studies
- (2015) Matthew E. Ritchie et al. NUCLEIC ACIDS RESEARCH
- Stem cells and healthy aging
- (2015) M. A. Goodell et al. SCIENCE
- Role of Muscle Stem Cells During Skeletal Regeneration
- (2015) Rana Abou-Khalil et al. STEM CELLS
- Global Reorganization of the Nuclear Landscape in Senescent Cells
- (2015) Tamir Chandra et al. Cell Reports
- Post-transcriptional regulation of satellite cell quiescence by TTP-mediated mRNA decay
- (2015) Melissa A Hausburg et al. eLife
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
- (2014) Suhas S.P. Rao et al. CELL
- Control of Cell Identity Genes Occurs in Insulated Neighborhoods in Mammalian Chromosomes
- (2014) Jill M. Dowen et al. CELL
- voom: precision weights unlock linear model analysis tools for RNA-seq read counts
- (2014) Charity W Law et al. GENOME BIOLOGY
- The Hallmarks of Aging
- (2013) Carlos López-Otín et al. CELL
- SUMO: A Multifaceted Modifier of Chromatin Structure and Function
- (2013) Caelin Cubeñas-Potts et al. DEVELOPMENTAL CELL
- Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
- (2013) Jason D Buenrostro et al. NATURE METHODS
- Micro- and nanoscale devices for the investigation of epigenetics and chromatin dynamics
- (2013) Carlos A. Aguilar et al. Nature Nanotechnology
- Chromatin Modifications as Determinants of Muscle Stem Cell Quiescence and Chronological Aging
- (2013) Ling Liu et al. Cell Reports
- Software for Computing and Annotating Genomic Ranges
- (2013) Michael Lawrence et al. PLoS Computational Biology
- The sva package for removing batch effects and other unwanted variation in high-throughput experiments
- (2012) Jeffrey T. Leek et al. BIOINFORMATICS
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- ENCODE: The human encyclopaedia
- (2012) Brendan Maher NATURE
- Topological domains in mammalian genomes identified by analysis of chromatin interactions
- (2012) Jesse R. Dixon et al. NATURE
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Wnt signaling in myogenesis
- (2012) Julia von Maltzahn et al. TRENDS IN CELL BIOLOGY
- RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
- (2011) Bo Li et al. BMC BIOINFORMATICS
- Hesr1 and Hesr3 are essential to generate undifferentiated quiescent satellite cells and to maintain satellite cell numbers
- (2011) S.-i. Fukada et al. DEVELOPMENT
- ERK5 Regulates Muscle Cell Fusion through Klf Transcription Factors
- (2011) Kazunori Sunadome et al. DEVELOPMENTAL CELL
- Satellite cells, the engines of muscle repair
- (2011) Yu Xin Wang et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- CREB Is Activated by Muscle Injury and Promotes Muscle Regeneration
- (2011) Randi Stewart et al. PLoS One
- Recent trends in chronic disease, impairment and disability among older adults in the United States
- (2011) William W Hung et al. BMC Geriatrics
- Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
- (2010) Sven Heinz et al. MOLECULAR CELL
- G-protein Coupled Receptors in Stem Cell Self-Renewal and Differentiation
- (2010) Nao R. Kobayashi et al. Stem Cell Reviews and Reports
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Wnt7a Activates the Planar Cell Polarity Pathway to Drive the Symmetric Expansion of Satellite Stem Cells
- (2009) Fabien Le Grand et al. Cell Stem Cell
- Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
- (2009) E. Lieberman-Aiden et al. SCIENCE
- A Temporal Switch from Notch to Wnt Signaling in Muscle Stem Cells Is Necessary for Normal Adult Myogenesis
- (2008) Andrew S. Brack et al. Cell Stem Cell
- Model-based Analysis of ChIP-Seq (MACS)
- (2008) Yong Zhang et al. GENOME BIOLOGY
Create your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started