The only constant is change: Endogenous circadian rhythms of soil microbial activities

A segmentation clock patterns cellular differentiation in a bacterial biofilm

(2022) Kwang-Tao Chou et al.   CELL

Metabolic cross-feeding structures the assembly of polysaccharide degrading communities

(2022) Sammy Pontrelli et al.   Science Advances

A circadian clock in a nonphotosynthetic prokaryote

(2021) Zheng Eelderink-Chen et al.   Science Advances

Light exposure mediates circadian rhythms of rhizosphere microbial communities

(2021) Kankan Zhao et al.   ISME Journal

Bacterial communities in larger islands have reduced temporal turnover

(2021) Damian W. Rivett et al.   ISME Journal

Deciphering sample size effect on microbial biogeographic patterns and community assembly processes at centimeter scale

(2021) Ran Xue et al.   SOIL BIOLOGY & BIOCHEMISTRY

Single strain control of microbial consortia

(2021) Alex J. H. Fedorec et al.   Nature Communications

Host Species and Geography Differentiate Honeybee Gut Bacterial Communities by Changing the Relative Contribution of Community Assembly Processes

(2021) Yuan Ge et al.   mBio

Obligate cross-feeding expands the metabolic niche of bacteria

(2021) Leonardo Oña et al.   Nature Ecology & Evolution

A macroecological description of alternative stable states reproduces intra- and inter-host variability of gut microbiome

(2021) Silvia Zaoli et al.   Science Advances

Short-range interactions govern the dynamics and functions of microbial communities

(2020) Alma Dal Co et al.   Nature Ecology & Evolution

Strength of species interactions determines biodiversity and stability in microbial communities

(2020) Christoph Ratzke et al.   Nature Ecology & Evolution

Dormancy dampens the microbial distance–decay relationship

(2020) K. J. Locey et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Context-dependent dynamics lead to the assembly of functionally distinct microbial communities

(2020) Leonora S. Bittleston et al.   Nature Communications

Soil Microbial Biogeography in a Changing World: Recent Advances and Future Perspectives

(2020) Haiyan Chu et al.   mSystems

A network approach to elucidate and prioritize microbial dark matter in microbial communities

(2020) Tatyana Zamkovaya et al.   ISME Journal

Biodiversity of key-stone phylotypes determines crop production in a 4-decade fertilization experiment

(2020) Kunkun Fan et al.   ISME Journal

A single bacterial genus maintains root growth in a complex microbiome

(2020) Omri M. Finkel et al.   NATURE

Circadian clocks: an overview on its adaptive significance

(2019) Sudhakar Krittika et al.   BIOLOGICAL RHYTHM RESEARCH

More Than the Sum of Its Parts: Microbiome Biodiversity as a Driver of Plant Growth and Soil Health

(2019) Muhammad Saleem et al.   Annual Review of Ecology Evolution and Systematics

Do prey select for vacant hunting domains to minimize a multi‐predator threat?

(2019) Michel T. Kohl et al.   ECOLOGY LETTERS

Stochastic processes shape microeukaryotic community assembly in a subtropical river across wet and dry seasons

(2019) Weidong Chen et al.   Microbiome

Soil bacterial networks are less stable under drought than fungal networks

(2018) Franciska T. de Vries et al.   Nature Communications

Strain-level diversity drives alternative community types in millimetre-scale granular biofilms

(2018) Gabriel E. Leventhal et al.   Nature Microbiology

The plant circadian clock influences rhizosphere community structure and function

(2017) Charley J Hubbard et al.   ISME Journal

The Pseudomonas putida T6SS is a plant warden against phytopathogens

(2017) Patricia Bernal et al.   ISME Journal

Stochastic Community Assembly: Does It Matter in Microbial Ecology?

(2017) Jizhong Zhou et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Patterns and Processes in Marine Microeukaryotic Community Biogeography from Xiamen Coastal Waters and Intertidal Sediments, Southeast China

(2017) Weidong Chen et al.   Frontiers in Microbiology

Diurnal cycling of rhizosphere bacterial communities is associated with shifts in carbon metabolism

(2017) Christopher Staley et al.   Microbiome

Stress and stability: applying the Anna Karenina principle to animal microbiomes

(2017) Jesse R. Zaneveld et al.   Nature Microbiology

Challenges in microbial ecology: building predictive understanding of community function and dynamics

(2016) Stefanie Widder et al.   ISME Journal

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Ecology and exploration of the rare biosphere

(2015) Michael D. J. Lynch et al.   NATURE REVIEWS MICROBIOLOGY

Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession

(2015) Francisco Dini-Andreote et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

lavaan: AnRPackage for Structural Equation Modeling

(2015) Yves Rosseel   Journal of Statistical Software

The problem of pattern and scale in ecology: what have we learned in 20 years?

(2013) Jérôme Chave   ECOLOGY LETTERS

Evaluating rRNA as an indicator of microbial activity in environmental communities: limitations and uses

(2013) Steven J Blazewicz et al.   ISME Journal

A meta-analysis of changes in bacterial and archaeal communities with time

(2013) Ashley Shade et al.   ISME Journal

Quantifying community assembly processes and identifying features that impose them

(2013) James C Stegen et al.   ISME Journal

Stochastic and deterministic assembly processes in subsurface microbial communities

(2012) James C Stegen et al.   ISME Journal

Peroxiredoxins are conserved markers of circadian rhythms

(2012) Rachel S. Edgar et al.   NATURE

Extended local similarity analysis (eLSA) of microbial community and other time series data with replicates

(2011) Li C Xia et al.   BMC Systems Biology