An intensity-based post-processing tool for 3D instance segmentation of organelles in soft X-ray tomograms

Soft X-ray tomography to map and quantify organelle interactions at the mesoscale

(2022) Valentina Loconte et al.   STRUCTURE

Auto-segmentation and time-dependent systematic analysis of mesoscale cellular structure in β-cells during insulin secretion

(2022) Angdi Li et al.   PLoS One

Mitochondrial Heterogeneity in Metabolic Diseases

(2021) Jennifer Ngo et al.   Biology-Basel

GLP-1 Receptor Signaling in Astrocytes Regulates Fatty Acid Oxidation, Mitochondrial Integrity, and Function

(2020) Katharina Timper et al.   Cell Metabolism

Task Based Semantic Segmentation of Soft X-ray CT Images Using 3D Convolutional Neural Networks

(2020) Axel Ekman et al.   MICROSCOPY AND MICROANALYSIS

Release of insulin granules by simultaneous, high‐speed correlative SICM‐FCM

(2020) Joanna Bednarska et al.   JOURNAL OF MICROSCOPY

Visualizing subcellular rearrangements in intact β cells using soft x-ray tomography

(2020) Kate L. White et al.   Science Advances

Visualizing insulin vesicle neighborhoods in β cells by cryo–electron tomography

(2020) Xianjun Zhang et al.   Science Advances

Quantitative 3D Mapping of the Human Skeletal Muscle Mitochondrial Network

(2019) Amy E. Vincent et al.   Cell Reports

A review on insulin trafficking and exocytosis

(2019) Mehrdad Vakilian et al.   GENE

The readily-releasable pool dynamically regulates multivesicular release

(2019) Jada H Vaden et al.   eLife

Opportunities and Challenges in Building a Spatiotemporal Multi-scale Model of the Human Pancreatic β Cell

(2018) Jitin Singla et al.   CELL

Interacting organelles

(2018) Sarah Cohen et al.   CURRENT OPINION IN CELL BIOLOGY

Uncoupled mitochondria quickly shorten along their long axis to form indented spheroids, instead of rings, in a fission-independent manner

(2018) Yoshihiro Miyazono et al.   Scientific Reports

An improved overlapping k-means clustering method for medical applications

(2017) Sina Khanmohammadi et al.   EXPERT SYSTEMS WITH APPLICATIONS

Applying systems-level spectral imaging and analysis to reveal the organelle interactome

(2017) Alex M. Valm et al.   NATURE

Mesoscale imaging with cryo-light and X-rays: Larger than molecular machines, smaller than a cell

(2016) Axel A. Ekman et al.   BIOLOGY OF THE CELL

Mitochondria Localize to Injured Axons to Support Regeneration

(2016) Sung Min Han et al.   NEURON

Mitochondrial morphology transitions and functions: implications for retrograde signaling?

(2013) Martin Picard et al.   AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY

Calcium/calmodulin-dependent serine protein kinase is involved in exendin-4-induced insulin secretion in INS-1 cells

(2013) Zheng-Qiu Zhu et al.   METABOLISM-CLINICAL AND EXPERIMENTAL

Cryo-soft X-ray tomography: a journey into the world of the native-state cell

(2013) Raffaella Carzaniga et al.   PROTOPLASMA

Mitochondrial dynamics and morphology in beta-cells

(2012) Linsey Stiles et al.   BEST PRACTICE & RESEARCH CLINICAL ENDOCRINOLOGY & METABOLISM

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

Laboratory cryo soft X-ray microscopy

(2011) H.M. Hertz et al.   JOURNAL OF STRUCTURAL BIOLOGY

Imaging cellular architecture with X-rays

(2010) Carolyn A Larabell et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Quantitative analysis of yeast internal architecture using soft X-ray tomography

(2010) Maho Uchida et al.   YEAST

Soft X-ray tomography of phenotypic switching and the cellular response to antifungal peptoids in Candida albicans

(2009) M. Uchida et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Soft X-ray tomography and cryogenic light microscopy: the cool combination in cellular imaging

(2009) Gerry McDermott et al.   TRENDS IN CELL BIOLOGY

Quantitative 3-D imaging of eukaryotic cells using soft X-ray tomography

(2008) Dilworth Y. Parkinson et al.   JOURNAL OF STRUCTURAL BIOLOGY