Applying systems-level spectral imaging and analysis to reveal the organelle interactome

Piecing Together the Patchwork of Contact Sites

(2017) Alberto T. Gatta et al.   TRENDS IN CELL BIOLOGY

A Tether Is a Tether Is a Tether: Tethering at Membrane Contact Sites

(2016) Michal Eisenberg-Bord et al.   DEVELOPMENTAL CELL

A far-red fluorescent protein evolved from a cyanobacterial phycobiliprotein

(2016) Erik A Rodriguez et al.   NATURE METHODS

Multiplexed Spectral Imaging of 120 Different Fluorescent Labels

(2016) Alex M. Valm et al.   PLoS One

caRpools: an R package for exploratory data analysis and documentation of pooled CRISPR/Cas9 screens

(2015) Jan Winter et al.   BIOINFORMATICS

Lipid droplet–organelle interactions: emerging roles in lipid metabolism

(2015) Antonio Daniel Barbosa et al.   CURRENT OPINION IN CELL BIOLOGY

Fatty Acid Trafficking in Starved Cells: Regulation by Lipid Droplet Lipolysis, Autophagy, and Mitochondrial Fusion Dynamics

(2015) Angelika S. Rambold et al.   DEVELOPMENTAL CELL

Multispectral labeling technique to map many neighboring axonal projections in the same tissue

(2015) Shlomo Tsuriel et al.   NATURE METHODS

Structure and function of ER membrane contact sites with other organelles

(2015) Melissa J. Phillips et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Hyperspectral light sheet microscopy

(2015) Wiebke Jahr et al.   Nature Communications

AMPK activation promotes lipid droplet dispersion on detyrosinated microtubules to increase mitochondrial fatty acid oxidation

(2015) Albert Herms et al.   Nature Communications

Visualization and correction of automated segmentation, tracking and lineaging from 5-D stem cell image sequences

(2014) Eric Wait et al.   BMC BIOINFORMATICS

ER Contact Sites Define the Position and Timing of Endosome Fission

(2014) Ashley A. Rowland et al.   CELL

Lattice light-sheet microscopy: Imaging molecules to embryos at high spatiotemporal resolution

(2014) Bi-Chang Chen et al.   SCIENCE

Arf1/COPI machinery acts directly on lipid droplets and enables their connection to the ER for protein targeting

(2014) Florian Wilfling et al.   eLife

Endoplasmic reticulum–endosome contact increases as endosomes traffic and mature

(2013) Jonathan R. Friedman et al.   MOLECULAR BIOLOGY OF THE CELL

Signals from the lysosome: a control centre for cellular clearance and energy metabolism

(2013) Carmine Settembre et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Mitochondrial lipid trafficking

(2013) Takashi Tatsuta et al.   TRENDS IN CELL BIOLOGY

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

Interplay between microtubule dynamics and intracellular organization

(2011) Hélène de Forges et al.   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY

Systems-level analysis of microbial community organization through combinatorial labeling and spectral imaging

(2011) A. M. Valm et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

ER Tubules Mark Sites of Mitochondrial Division

(2011) J. R. Friedman et al.   SCIENCE

ER sliding dynamics and ER–mitochondrial contacts occur on acetylated microtubules

(2010) Jonathan R. Friedman et al.   JOURNAL OF CELL BIOLOGY

Automatic Summarization of Changes in Biological Image Sequences Using Algorithmic Information Theory

(2009) A.R. Cohen et al.   IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE

Autophagy regulates lipid metabolism

(2009) Rajat Singh et al.   NATURE

Robust single-particle tracking in live-cell time-lapse sequences

(2008) Khuloud Jaqaman et al.   NATURE METHODS

Cellular cholesterol trafficking and compartmentalization

(2008) Elina Ikonen   NATURE REVIEWS MOLECULAR CELL BIOLOGY