Single‐cell RNA ‐seq reveals fate determination control of an individual fibre cell initiation in cotton ( Gossypium hirsutum )

A single-cell Arabidopsis root atlas reveals developmental trajectories in wild-type and cell identity mutants

(2022) Rachel Shahan et al.   DEVELOPMENTAL CELL

A rice single cell transcriptomic atlas defines the developmental trajectories of rice floret and inflorescence meristems

(2022) Jie Zong et al.   NEW PHYTOLOGIST

The single-cell stereo-seq reveals region-specific cell subtypes and transcriptome profiling in Arabidopsis leaves

(2022) Keke Xia et al.   DEVELOPMENTAL CELL

Advances and applications of single‐cell omics technologies in plant research

(2022) Yajin Mo et al.   PLANT JOURNAL

Identification of novel regulators required for early development of vein pattern in the cotyledons by single‐cell RNA ‐sequencing

(2022) Zhixin Liu et al.   PLANT JOURNAL

A conserved superlocus regulates above- and belowground root initiation

(2022) Moutasem Omary et al.   SCIENCE

Single‐cell transcriptome atlas reveals developmental trajectories and a novel metabolic pathway of catechin esters in tea leaves

(2022) Qiang Wang et al.   PLANT BIOTECHNOLOGY JOURNAL

Recent Advances and Future Perspectives in Cotton Research

(2021) Gai Huang et al.   Annual Review of Plant Biology

Single-cell RNA sequencing of developing maize ears facilitates functional analysis and trait candidate gene discovery

(2021) Xiaosa Xu et al.   DEVELOPMENTAL CELL

Advances and Opportunities of Single-Cell Transcriptomics for Plant Research

(2021) Carolin Seyfferth et al.   Annual Review of Plant Biology

A single-cell analysis of the Arabidopsis vegetative shoot apex

(2021) Tian-Qi Zhang et al.   DEVELOPMENTAL CELL

Single-cell resolution of lineage trajectories in the Arabidopsis stomatal lineage and developing leaf

(2021) Camila B. Lopez-Anido et al.   DEVELOPMENTAL CELL

Single-cell transcriptome atlas and chromatin accessibility landscape reveal differentiation trajectories in the rice root

(2021) Tian-Qi Zhang et al.   Nature Communications

Plant Cell Identity in the Era of Single-Cell Transcriptomics

(2021) Kook Hui Ryu et al.   Annual Review of Genetics

Single-cell transcriptome atlas of the leaf and root of rice seedlings

(2021) Yu Wang et al.   Journal of Genetics and Genomics

Single‐cell RNA sequencing reveals a high‐resolution cell atlas of xylem in Populus

(2021) Hui Li et al.   Journal of Integrative Plant Biology

Single‐cell RNA‐seq Describes the Transcriptome Landscape and Identifies Critical Transcription Factors in the Leaf Blade of the Allotetraploid Peanut ( Arachis hypogaea L .)

(2021) Hao Liu et al.   PLANT BIOTECHNOLOGY JOURNAL

Single‐cell RNA sequencing profiles of stem‐differentiating xylem in poplar

(2021) Jianbo Xie et al.   PLANT BIOTECHNOLOGY JOURNAL

Single-cell transcriptomics sheds light on the identity and metabolism of developing leaf cells

(2021) Rubén Tenorio Berrío et al.   PLANT PHYSIOLOGY

Ground tissue circuitry regulates organ complexity in maize and Setaria

(2021) Carlos Ortiz-Ramírez et al.   SCIENCE

Crafting a blueprint for single-cell RNA sequencing

(2021) Tom Denyer et al.   TRENDS IN PLANT SCIENCE

The miR319-Targeted GhTCP4 Promotes the Transition from Cell Elongation to Wall Thickening in Cotton Fiber

(2020) Jun-Feng Cao et al.   Molecular Plant

Arabidopsis JMJ29 is involved in trichome development by regulating the core trichome initiation gene GLABRA3

(2020) Fu‐Yu Hung et al.   PLANT JOURNAL

Global Dynamic Molecular Profiling of Stomatal Lineage Cell Development by Single-Cell RNA Sequencing

(2020) Zhixin Liu et al.   Molecular Plant

Looking into ‘hair tonics’ for cotton fiber initiation

(2020) Lu Wang et al.   NEW PHYTOLOGIST

Vascular transcription factors guide plant epidermal responses to limiting phosphate conditions

(2020) Jos R. Wendrich et al.   SCIENCE

Single-Cell Transcriptome Analysis in Plants: Advances and Challenges

(2020) Rahul Shaw et al.   Molecular Plant

Transcriptional landscape of rice roots at the single-cell resolution

(2020) Qing Liu et al.   Molecular Plant

Plant stem-cell organization and differentiation at single-cell resolution

(2020) James W. Satterlee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MIXTAs and phytohormones orchestrate cotton fiber development

(2020) Yue Tian et al.   CURRENT OPINION IN PLANT BIOLOGY

Single-cell RNA sequencing resolves molecular relationships among individual plant cells

(2019) Kook Hui Ryu et al.   PLANT PHYSIOLOGY

Dynamics of gene expression in single root cells of A. thaliana

(2019) Ken Jean-Baptiste et al.   PLANT CELL

Spatiotemporal Developmental Trajectories in the Arabidopsis Root Revealed Using High-Throughput Single-Cell RNA Sequencing

(2019) Tom Denyer et al.   DEVELOPMENTAL CELL

Cytokinin inhibits cotton fiber initiation by disrupting PIN3a-mediated asymmetric accumulation of auxin in the ovule epidermis

(2019) Jianyan Zeng et al.   JOURNAL OF EXPERIMENTAL BOTANY

A Single-Cell RNA Sequencing Profiles the Developmental Landscape of Arabidopsis Root

(2019) Tian-Qi Zhang et al.   Molecular Plant

Transcriptome analysis reveals differences in the mechanisms of fiber initiation and elongation between long- and short-fiber cotton (Gossypium hirsutum L.) lines

(2019) Yuan Qin et al.   BMC GENOMICS

The TCP4 transcription factor directly activates TRICHOMELESS1 and 2 and suppresses trichome initiation

(2019) Batthula Vijaya Lakshmi Vadde et al.   PLANT PHYSIOLOGY

Genetic dissection of the fuzzless seed trait in Gossypium barbadense

(2018) Qian-Hao Zhu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Multi-omics analyses reveal epigenomics basis for cotton somatic embryogenesis through successive regeneration acclimation (SRA) process

(2018) Jianying Li et al.   PLANT BIOTECHNOLOGY JOURNAL

Reference genome sequences of two cultivated allotetraploid cottons, Gossypium hirsutum and Gossypium barbadense

(2018) Maojun Wang et al.   NATURE GENETICS

Hi-TOM: a platform for high-throughput tracking of mutations induced by CRISPR/Cas systems

(2018) Qing Liu et al.   Science China-Life Sciences

Genetics and evolution of MIXTA genes regulating cotton lint fiber development

(2017) Huaitong Wu et al.   NEW PHYTOLOGIST

Transcriptomic repertoires depict the initiation of lint and fuzz fibres in cotton (Gossypium hirsutum L.)

(2017) Haiyan Hu et al.   PLANT BIOTECHNOLOGY JOURNAL

High efficient multisites genome editing in allotetraploid cotton (Gossypium hirsutum ) using CRISPR/Cas9 system

(2017) Pengcheng Wang et al.   PLANT BIOTECHNOLOGY JOURNAL

Massively parallel digital transcriptional profiling of single cells

(2017) Grace X. Y. Zheng et al.   Nature Communications

Small interfering RNAs from bidirectional transcripts ofGhMML3_A12regulate cotton fiber development

(2016) Qun Wan et al.   NEW PHYTOLOGIST

GhJAZ2 negatively regulates cotton fiber initiation by interacting with the R2R3-MYB transcription factor GhMYB25-like

(2016) Haiyan Hu et al.   PLANT JOURNAL

iTRAQ-facilitated proteomic profiling of anthers from a photosensitive male sterile mutant and wild-type cotton (Gossypium hirsutum L.)

(2015) Ji Liu et al.   Journal of Proteomics

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement

(2015) Tianzhen Zhang et al.   NATURE BIOTECHNOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

ArabidopsisDELLA and Two HD-ZIP Transcription Factors Regulate GA Signaling in the Epidermis through the L1 Boxcis-Element

(2014) Belén Rombolá-Caldentey et al.   PLANT CELL

ArabidopsisDELLA and JAZ Proteins Bind the WD-Repeat/bHLH/MYB Complex to Modulate Gibberellin and Jasmonate Signaling Synergy

(2014) Tiancong Qi et al.   PLANT CELL

Silencing the vacuolar invertase geneGhVIN1blocks cotton fiber initiation from the ovule epidermis, probably by suppressing a cohort of regulatory genes via sugar signaling

(2014) Lu Wang et al.   PLANT JOURNAL

Control of cotton fibre elongation by a homeodomain transcription factor GhHOX3

(2014) Chun-Min Shan et al.   Nature Communications

Interaction between Two Timing MicroRNAs Controls Trichome Distribution in Arabidopsis

(2014) Xue-Yi Xue et al.   PLoS Genetics

Members of the MYBMIXTA-like transcription factors may orchestrate the initiation of fiber development in cotton seeds

(2014) Frank Bedon et al.   Frontiers in Plant Science

Zinc Finger Protein 6(ZFP6) regulates trichome initiation by integrating gibberellin and cytokinin signaling inArabidopsis thaliana

(2013) Zhongjing Zhou et al.   NEW PHYTOLOGIST

CottonGhCKIdisrupts normal male reproduction by delaying tapetum programmed cell death via inactivating starch synthase

(2013) Ling Min et al.   PLANT JOURNAL

Cotton fiber: a powerful single-cell model for cell wall and cellulose research

(2012) Candace H. Haigler et al.   Frontiers in Plant Science

Functional characterization of TRICHOMELESS2, a new single-repeat R3 MYB transcription factor in the regulation of trichome patterning in Arabidopsis

(2011) Lijun Gan et al.   BMC PLANT BIOLOGY

Spatiotemporal manipulation of auxin biosynthesis in cotton ovule epidermal cells enhances fiber yield and quality

(2011) Mi Zhang et al.   NATURE BIOTECHNOLOGY

The Jasmonate-ZIM-Domain Proteins Interact with the WD-Repeat/bHLH/MYB Complexes to Regulate Jasmonate-Mediated Anthocyanin Accumulation and Trichome Initiation inArabidopsis thaliana

(2011) Tiancong Qi et al.   PLANT CELL

GbPDF1 Is Involved in Cotton Fiber Initiation via the Core cis-Element HDZIP2ATATHB2

(2011) F. Deng et al.   PLANT PHYSIOLOGY

Gene expression in developing fibres of Upland cotton (Gossypium hirsutum L.) was massively altered by domestication

(2010) Ryan A Rapp et al.   BMC BIOLOGY

How cotton fibers elongate: a tale of linear cell-growth mode

(2010) Yong-Mei Qin et al.   CURRENT OPINION IN PLANT BIOLOGY

Temporal Control of Trichome Distribution by MicroRNA156-Targeted SPL Genes in Arabidopsis thaliana

(2010) N. Yu et al.   PLANT CELL

GhMYB25-like: a key factor in early cotton fibre development

(2010) Sally-Ann Walford et al.   PLANT JOURNAL

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

The MYB transcription factor GhMYB25 regulates early fibre and trichome development

(2009) Adriane Machado et al.   PLANT JOURNAL

The TTG1-bHLH-MYB complex controls trichome cell fate and patterning through direct targeting of regulatory loci

(2008) M. Zhao et al.   DEVELOPMENT

The R2R3 MYB Transcription Factor GhMYB109 Is Required for Cotton Fiber Development

(2008) L. Pu et al.   GENETICS

The Evolution of Spinnable Cotton Fiber Entailed Prolonged Development and a Novel Metabolism

(2008) Ran Hovav et al.   PLoS Genetics