Chromosomal assembly of the flat oyster ( Ostrea edulis L.) genome as a new genetic resource for aquaculture
出版年份 2022 全文链接
标题
Chromosomal assembly of the flat oyster (
Ostrea edulis
L.) genome as a new genetic resource for aquaculture
作者
关键词
-
出版物
Evolutionary Applications
Volume -, Issue -, Pages -
出版商
Wiley
发表日期
2022-08-20
DOI
10.1111/eva.13462
参考文献
相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。- A tale of two fish: Comparative transcriptomics of resistant and susceptible steelhead following exposure to Ceratonova shasta highlights differences in parasite recognition
- (2021) Damien E. Barrett et al. PLoS One
- Extensive genome-wide duplications in the eastern oyster ( Crassostrea virginica )
- (2021) Tejashree H. Modak et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Digging into bivalve miRNAomes: between conservation and innovation
- (2021) Umberto Rosani et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- A chromosome-level genome assembly for the Pacific oyster Crassostrea gigas
- (2021) Carolina Peñaloza et al. GigaScience
- Chromosome-level genome assembly of the hard-shelled mussel Mytilus coruscus, a widely distributed species from the temperate areas of East Asia
- (2021) Jin-Long Yang et al. GigaScience
- Transcriptomic Response to Perkinsus marinus in Two Crassostrea Oysters Reveals Evolutionary Dynamics of Host-Parasite Interactions
- (2021) Jiulin Chan et al. Frontiers in Genetics
- miR-148 targets CiGadd45ba and CiGadd45bb to modulate the inflammatory response to bacterial infection in grass carp
- (2020) Yuan Fang et al. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY
- RepeatModeler2 for automated genomic discovery of transposable element families
- (2020) Jullien M. Flynn et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The gene-rich genome of the scallop Pecten maximus
- (2020) Nathan J Kenny et al. GigaScience
- Transcriptional Alteration of Gene Biomarkers in Hemocytes of Wild Ostrea edulis with Molecular Evidence of Infections with Bonamia spp. and/or Marteilia refringens Parasites
- (2020) Paolo Cocci et al. Pathogens
- Discovery and functional understanding of MiRNAs in molluscs: a genome-wide profiling approach
- (2020) Songqian Huang et al. RNA Biology
- Characterization of the ScghC1q-1 gene in Sinonovacula constricta and its role in innate immune responses
- (2019) Yan Li et al. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY
- Signatures of selection for bonamiosis resistance in European flat oyster ( Ostrea edulis ): New genomic tools for breeding programs and management of natural resources
- (2019) Manuel Vera et al. Evolutionary Applications
- Chromosomal-level assembly of the blood clam, Scapharca (Anadara) broughtonii, using long sequence reads and Hi-C
- (2019) Chang-Ming Bai et al. GigaScience
- Solute carriers in scallop genome: Gene expansion and expression regulation after exposure to toxic dinoflagellate
- (2019) Xiaogang Xun et al. CHEMOSPHERE
- Transmembrane (TMEM) protein family members: Poorly characterized even if essential for the metastatic process
- (2019) Sébastien Marx et al. SEMINARS IN CANCER BIOLOGY
- Involvement of apoptosis in the dialogue between the parasite Bonamia ostreae and the flat oyster Ostrea edulis
- (2019) Ophélie Gervais et al. FISH & SHELLFISH IMMUNOLOGY
- Extensive Tandem Duplication Events Drive the Expansion of the C1q-Domain-Containing Gene Family in Bivalves
- (2019) Marco Gerdol et al. Marine Drugs
- Diversity of cilia-based mechanosensory systems and their functions in marine animal behaviour
- (2019) Luis Alberto Bezares-Calderón et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Clinical and Functional Relevance of the Monocarboxylate Transporter Family in Disease Pathophysiology and Drug Therapy
- (2018) Pascale Fisel et al. CTS-Clinical and Translational Science
- Long-term affected flat oyster ( Ostrea edulis ) haemocytes show differential gene expression profiles from naïve oysters in response to Bonamia ostreae
- (2018) P. Ronza et al. GENOMICS
- Genomic Tools and Selective Breeding in Molluscs
- (2018) Christopher M. Hollenbeck et al. Frontiers in Genetics
- OUP accepted manuscript
- (2018) DNA RESEARCH
- Regulation of apoptosis-related genes during interactions between oyster hemocytes and the alveolate parasite Perkinsus marinus
- (2018) Yuk-Ting Lau et al. FISH & SHELLFISH IMMUNOLOGY
- The Whole-Genome and Transcriptome of the Manila Clam (Ruditapes philippinarum)
- (2017) Seyoung Mun et al. Genome Biology and Evolution
- MicroRNA-3570 Modulates the NF-κB Pathway in Teleost Fish by Targeting MyD88
- (2017) Qing Chu et al. JOURNAL OF IMMUNOLOGY
- Harnessing the Power of Genomics to Secure the Future of Seafood
- (2017) Louis Bernatchez et al. TRENDS IN ECOLOGY & EVOLUTION
- The pearl oyster Pinctada fucata martensii genome and multi-omic analyses provide insights into biomineralization
- (2017) Xiaodong Du et al. GigaScience
- Scallop genome provides insights into evolution of bilaterian karyotype and development
- (2017) Shi Wang et al. Nature Ecology & Evolution
- Construction of an Ostrea edulis database from genomic and expressed sequence tags (ESTs) obtained from Bonamia ostreae infected haemocytes: Development of an immune-enriched oligo-microarray
- (2016) Belén G. Pardo et al. FISH & SHELLFISH IMMUNOLOGY
- Epigenetics: A New Model for Intracellular Parasite–Host Cell Regulation
- (2016) W. Robert McMaster et al. TRENDS IN PARASITOLOGY
- Decreased expression of SLC39A14 is associated with tumor aggressiveness and biochemical recurrence of human prostate cancer
- (2016) Qian-De Liao et al. OncoTargets and Therapy
- BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
- (2015) Felipe A. Simão et al. BIOINFORMATICS
- The immune system and its modulation mechanism in scallop
- (2015) Linsheng Song et al. FISH & SHELLFISH IMMUNOLOGY
- Transcriptome analysis reveals strong and complex antiviral response in a mollusc
- (2015) Yan He et al. FISH & SHELLFISH IMMUNOLOGY
- Analysis of synonymous codon usage patterns in sixty-four different bivalve species
- (2015) Marco Gerdol et al. PeerJ
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Bioinformatics analysis of hemocyte miRNAs of scallop Chlamys farreri against acute viral necrobiotic virus (AVNV)
- (2014) Guofu Chen et al. FISH & SHELLFISH IMMUNOLOGY
- Role of microRNAs in the immunity process of the flat oyster Ostrea edulis against bonamiosis
- (2014) Laura Martín-Gómez et al. INFECTION GENETICS AND EVOLUTION
- The MaSuRCA genome assembler
- (2013) Aleksey V. Zimin et al. BIOINFORMATICS
- Infernal 1.1: 100-fold faster RNA homology searches
- (2013) E. P. Nawrocki et al. BIOINFORMATICS
- Temporal expression patterns of rainbow trout immune-related genes in response to Myxobolus cerebralis exposure
- (2013) Melinda R. Baerwald FISH & SHELLFISH IMMUNOLOGY
- Gene expression under chronic heat stress in populations of the mustard hill coral (Porites astreoides ) from different thermal environments
- (2013) C. D. Kenkel et al. MOLECULAR ECOLOGY
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- Retrotransposons
- (2012) David J. Finnegan CURRENT BIOLOGY
- Mutation in promoter region of a serine protease inhibitor confers Perkinsus marinus resistance in the eastern oyster (Crassostrea virginica)
- (2012) Yan He et al. FISH & SHELLFISH IMMUNOLOGY
- The oyster genome reveals stress adaptation and complexity of shell formation
- (2012) Guofan Zhang et al. NATURE
- Identification and Comparative Analysis of MicroRNAs Associated with Low-N Tolerance in Rice Genotypes
- (2012) Lata Nischal et al. PLoS One
- MicroRNAs and the cell cycle
- (2011) María José Bueno et al. BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE
- Oyster Reefs at Risk and Recommendations for Conservation, Restoration, and Management
- (2011) Michael W. Beck et al. BIOSCIENCE
- tRNA genes in eukaryotic genome organization and reorganization
- (2011) Ramsay J. McFarlane et al. CELL CYCLE
- Polymorphism in a serine protease inhibitor gene and its association with disease resistance in the eastern oyster (Crassostrea virginica Gmelin)
- (2011) Haiyang Yu et al. FISH & SHELLFISH IMMUNOLOGY
- MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
- (2011) K. Tamura et al. MOLECULAR BIOLOGY AND EVOLUTION
- Full-length transcriptome assembly from RNA-Seq data without a reference genome
- (2011) Manfred G Grabherr et al. NATURE BIOTECHNOLOGY
- Matrix metalloproteinases as therapeutic targets in protozoan parasitic infections
- (2011) Nathalie Geurts et al. PHARMACOLOGY & THERAPEUTICS
- Trypanosoma cruzi Utilizes the Host Low Density Lipoprotein Receptor in Invasion
- (2011) Fnu Nagajyothi et al. PLoS Neglected Tropical Diseases
- Genomic organization of eukaryotic tRNAs
- (2010) Clara Bermudez-Santana et al. BMC GENOMICS
- The Gypsy Database (GyDB) of mobile genetic elements: release 2.0
- (2010) C. Llorens et al. NUCLEIC ACIDS RESEARCH
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- tRNA as an active chemical scaffold for diverse chemical transformations
- (2009) Christopher S. Francklyn et al. FEBS LETTERS
- Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
- (2009) Da Wei Huang et al. Nature Protocols
- Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
- (2009) E. Lieberman-Aiden et al. SCIENCE
- TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops
- (2008) I. Milne et al. BIOINFORMATICS
- Mapping and quantifying mammalian transcriptomes by RNA-Seq
- (2008) Ali Mortazavi et al. NATURE METHODS
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreDiscover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversation