Coping with harsh heat environments: molecular adaptation of metabolic depression in the intertidal snail Echinolittorina radiata

Can heat shock protein 70 (HSP70) serve as biomarkers in Antarctica for future ocean acidification, warming and salinity stress?

(2022) Nur Athirah Yusof et al.   POLAR BIOLOGY

Demographic, physiological and genetic factors linked to the poleward range expansion of the snail Nerita yoldii along the shoreline of China

(2022) Jie Wang et al.   MOLECULAR ECOLOGY

Physiological determinants of biogeography: the importance of metabolic depression to heat tolerance

(2021) Ming‐ling Liao et al.   GLOBAL CHANGE BIOLOGY

Temperature adaptations of the thermophilic snail Echinolittorina malaccana: insights from metabolomic analysis

(2021) Ya-qi Chen et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Behavioral repertoire of high‐shore littorinid snails reveals novel adaptations to an extreme environment

(2021) Terence P. T. Ng et al.   Ecology and Evolution

Coping with stress in a warming Gulf: the postlarval American lobster’s cellular stress response under future warming scenarios

(2021) Rebecca N. Lopez-Anido et al.   CELL STRESS & CHAPERONES

Elevated seasonal temperature disrupts prooxidant-antioxidant homeostasis and promotes cellular apoptosis in the American oyster, Crassostrea virginica, in the Gulf of Mexico: a field study

(2021) Md Sadequr Rahman et al.   CELL STRESS & CHAPERONES

Transcriptomic response of the intertidal limpet Patella vulgata to temperature extremes

(2021) Catarina Moreira et al.   JOURNAL OF THERMAL BIOLOGY

An integrated, multi‐level analysis of thermal effects on intertidal molluscs for understanding species distribution patterns

(2021) Yun‐wei Dong et al.   BIOLOGICAL REVIEWS

Timing metabolic depression: predicting thermal stress in extreme intertidal environments

(2020) Tin Yan Hui et al.   AMERICAN NATURALIST

Covid-19, heat shock proteins, and autoimmune bullous diseases: a potential link deserving further attention

(2020) Michael Kasperkiewicz   CELL STRESS & CHAPERONES

RNAi based transcriptome suggests genes potentially regulated by HSF1 in the Pacific oyster Crassostrea gigas under thermal stress

(2019) Youli Liu et al.   BMC GENOMICS

Cellular stress responses to chronic heat shock and shell damage in temperate Mya truncata

(2018) Victoria A. Sleight et al.   CELL STRESS & CHAPERONES

Phenotypic and transcriptomic responses to salinity stress across genetically and geographically divergent Tigriopus californicus populations

(2018) Melissa B. DeBiasse et al.   MOLECULAR ECOLOGY

Divergence and plasticity shape adaptive potential of the Pacific oyster

(2018) Li Li et al.   Nature Ecology & Evolution

High thermal stress responses of Echinolittorina snails at their range edge predict population vulnerability to future warming

(2018) Guo-dong Han et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Differential expression of stress candidate genes for thermal tolerance in the sea urchin Loxechinus albus

(2017) Jonathan Vergara-Amado et al.   JOURNAL OF THERMAL BIOLOGY

Salmon provides fast and bias-aware quantification of transcript expression

(2017) Rob Patro et al.   NATURE METHODS

Standing in the sun: infrared thermography reveals distinct thermal regulatory behaviours in two tropical high-shore littorinid snails

(2016) Laurent Seuront et al.   JOURNAL OF MOLLUSCAN STUDIES

Comparative transcriptomics across populations offers new insights into the evolution of thermal resistance in marine snails

(2016) Wei Wang et al.   MARINE BIOLOGY

OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs

(2016) Evgeny M. Zdobnov et al.   NUCLEIC ACIDS RESEARCH

Can respiratory physiology predict thermal niches?

(2015) Wilco C.E.P. Verberk et al.   Annals of the New York Academy of Sciences

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Biodiversity mediates top-down control in eelgrass ecosystems: a global comparative-experimental approach

(2015) J. Emmett Duffy et al.   ECOLOGY LETTERS

The environmental genomics of metazoan thermal adaptation

(2015) D Porcelli et al.   HEREDITY

Latitudinal variability of physiological responses to heat stress of the intertidal limpet Cellana toreuma along the Asian coast

(2015) YW Dong et al.   MARINE ECOLOGY PROGRESS SERIES

RNA-seq reveals regional differences in transcriptome response to heat stress in the marine snailChlorostoma funebralis

(2015) Lani U. Gleason et al.   MOLECULAR ECOLOGY

The Pfam protein families database: towards a more sustainable future

(2015) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Thermal tolerance and climate warming sensitivity in tropical snails

(2015) David J. Marshall et al.   Ecology and Evolution

Latitudinal variability of physiological responses to heat stress of the intertidal limpet Cellana toreuma along the Asian coast

(2015) YW Dong et al.   MARINE ECOLOGY PROGRESS SERIES

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

Temporal patterns of cardiac performance and genes encoding heat shock proteins and metabolic sensors of an intertidal limpet Cellana toreuma during sublethal heat stress

(2014) Shu Zhang et al.   JOURNAL OF THERMAL BIOLOGY

Effect of increasing temperature in the differential activity of oxidative stress biomarkers in various tissues of the Rock goby, Gobius paganellus

(2014) Catarina Vinagre et al.   MARINE ENVIRONMENTAL RESEARCH

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Physiological plasticity increases resilience of ectothermic animals to climate change

(2014) Frank Seebacher et al.   Nature Climate Change

A delayed antioxidant response in heat-stressed cells expressing a non-DNA binding HSF1 mutant

(2013) Sanne M. M. Hensen et al.   CELL STRESS & CHAPERONES

The NCEP Climate Forecast System Version 2

(2013) Suranjana Saha et al.   JOURNAL OF CLIMATE

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Energy homeostasis as an integrative tool for assessing limits of environmental stress tolerance in aquatic invertebrates

(2012) Inna M. Sokolova et al.   MARINE ENVIRONMENTAL RESEARCH

The oyster genome reveals stress adaptation and complexity of shell formation

(2012) Guofan Zhang et al.   NATURE

Thermal adaptation in the intertidal snail Echinolittorina malaccana contradicts current theory by revealing the crucial roles of resting metabolism

(2011) D. J. Marshall et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Response of intertidal populations to climate: Effects of extreme events versus long term change

(2011) David S. Wethey et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Variations in cardiac performance and heat shock protein expression to thermal stress in two differently zoned limpets on a tropical rocky shore

(2011) Yun-wei Dong et al.   MARINE BIOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Heat-Shock Protein 70 (Hsp70) Expression in Four Limpets of the Genus Lottia: Interspecific Variation in Constitutive and Inducible Synthesis Correlates With in situ Exposure to Heat Stress

(2010) Yunwei Dong et al.   BIOLOGICAL BULLETIN

Oxygen- and capacity-limitation of thermal tolerance: a matrix for integrating climate-related stressor effects in marine ecosystems

(2010) H.-O. Portner   JOURNAL OF EXPERIMENTAL BIOLOGY

The physiology of climate change: how potentials for acclimatization and genetic adaptation will determine 'winners' and 'losers'

(2010) G. N. Somero   JOURNAL OF EXPERIMENTAL BIOLOGY

Seasonal and latitudinal acclimatization of cardiac transcriptome responses to thermal stress in porcelain crabs, Petrolisthes cinctipes

(2009) JONATHON H. STILLMAN et al.   MOLECULAR ECOLOGY

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Complex interactions in a rapidly changing world: responses of rocky shore communities to recent climate change

(2008) SJ Hawkins et al.   CLIMATE RESEARCH

Rhythms of Gene Expression in a Fluctuating Intertidal Environment

(2008) Andrew Y. Gracey et al.   CURRENT BIOLOGY

A metabolic view of the diversity–stability relationship

(2008) Julián Simón López-Villalta   JOURNAL OF THEORETICAL BIOLOGY

Rfam: updates to the RNA families database

(2008) P. P. Gardner et al.   NUCLEIC ACIDS RESEARCH