Transcriptomic response of the intertidal limpet Patella vulgata to temperature extremes

Transcriptomic response to decreased pH in adult, larval and juvenile red king crab, Paralithodes camtschaticus, and interactive effects of pH and temperature on juveniles

(2020) Jonathon H. Stillman et al.   JOURNAL OF THE MARINE BIOLOGICAL ASSOCIATION OF THE UNITED KINGDOM

Different Transcriptomic Responses to Thermal Stress in Heat-Tolerant and Heat-Sensitive Pacific Abalones Indicated by Cardiac Performance

(2019) Nan Chen et al.   Frontiers in Physiology

Heat Waves, the New Normal: Summertime Temperature Extremes Will Impact Animals, Ecosystems, and Human Communities

(2019) Jonathon H. Stillman   PHYSIOLOGY

RNA-seq reveals temporal differences in the transcriptome response to acute heat stress in the Atlantic salmon (Salmo salar)

(2019) Kun-Peng Shi et al.   Comparative Biochemistry and Physiology D-Genomics & Proteomics

Plasticity of foot muscle and cardiac thermal limits in the limpet Lottia limatula from locations with differing temperatures

(2019) T Wang et al.   Aquatic Biology

Remotely-sensed L4 SST underestimates the thermal fingerprint of coastal upwelling

(2019) Claudia Meneghesso et al.   REMOTE SENSING OF ENVIRONMENT

Adaptations to the mudflat: Insights from physiological and transcriptional responses to thermal stress in a burrowing bivalve Sinonovacula constricta

(2019) Wen-yi Zhang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Cellular stress responses to chronic heat shock and shell damage in temperate Mya truncata

(2018) Victoria A. Sleight et al.   CELL STRESS & CHAPERONES

WEGO 2.0: a web tool for analyzing and plotting GO annotations, 2018 update

(2018) Jia Ye et al.   NUCLEIC ACIDS RESEARCH

Longer and more frequent marine heatwaves over the past century

(2018) Eric C. J. Oliver et al.   Nature Communications

Characterization of Chiton Ischnochiton hakodadensis Foot Based on Transcriptome Sequencing

(2018) Huaiqian Dou et al.   Journal of Ocean University of China

STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets

(2018) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database in 2019

(2018) Sara El-Gebali et al.   NUCLEIC ACIDS RESEARCH

Immune response to temperature stress in three bivalve species: Pacific oyster Crassostrea gigas, Mediterranean mussel Mytilus galloprovincialis and mud cockle Katelysia rhytiphora

(2018) M.A. Rahman et al.   FISH & SHELLFISH IMMUNOLOGY

The role of stochastic thermal environments in modulating the thermal physiology of an intertidal limpet,Lottia digitalis

(2017) Madeline J. Drake et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

A Tissue-Mapped Axolotl De Novo Transcriptome Enables Identification of Limb Regeneration Factors

(2017) Donald M. Bryant et al.   Cell Reports

Heat shock protein 83 plays pleiotropic roles in embryogenesis, longevity, and fecundity of the pea aphid Acyrthosiphon pisum

(2016) Torsten Will et al.   DEVELOPMENT GENES AND EVOLUTION

Biodiversity in marine invertebrate responses to acute warming revealed by a comparative multi-omics approach

(2016) Melody S. Clark et al.   GLOBAL CHANGE BIOLOGY

Equatorial range limits of an intertidal ectotherm are more linked to water than air temperature

(2016) Rui Seabra et al.   GLOBAL CHANGE BIOLOGY

Exposure to solar radiation drives organismal vulnerability to climate: Evidence from an intertidal limpet

(2016) Coraline Chapperon et al.   JOURNAL OF THERMAL BIOLOGY

Acclimation to elevated emersion temperature has no effect on susceptibility to acute, heat-induced lipid peroxidation in an intertidal mussel (Mytilus californianus)

(2016) Ana Gabriela Jimenez et al.   MARINE BIOLOGY

Expression Characterization of Stress Genes Under High and Low Temperature Stresses in the Pacific Oyster, Crassostrea gigas

(2016) Qihui Zhu et al.   MARINE BIOTECHNOLOGY

Difference in Thermotolerance Between Green and Red Color Variants of the Japanese Sea Cucumber, Apostichopus japonicus Selenka: Hsp70 and Heat-Hardening Effect

(2016) Yun-Wei Dong et al.   BIOLOGICAL BULLETIN

Physiological, cellular and biochemical thermal stress response of intertidal shrimps with different vertical distributions: Palaemon elegans and Palaemon serratus

(2015) Diana Madeira et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Loss of thermal refugia near equatorial range limits

(2015) Fernando P. Lima et al.   GLOBAL CHANGE BIOLOGY

RNA-seq reveals regional differences in transcriptome response to heat stress in the marine snailChlorostoma funebralis

(2015) Lani U. Gleason et al.   MOLECULAR ECOLOGY

The ADAMTS (A Disintegrin and Metalloproteinase with Thrombospondin motifs) family

(2015) Richard Kelwick et al.   GENOME BIOLOGY

Genome-wide identification of heat shock proteins (Hsps) and Hsp interactors in rice: Hsp70s as a case study

(2014) Yongfei Wang et al.   BMC GENOMICS

Regulation of protein turnover by heat shock proteins

(2014) Perinur Bozaykut et al.   FREE RADICAL BIOLOGY AND MEDICINE

Stress modulation of cellular metabolic sensors: interaction of stress from temperature and rainfall on the intertidal limpetCellana toreuma

(2014) Yun-wei Dong et al.   MOLECULAR ECOLOGY

Genetics of Climate Change Adaptation

(2012) Steven J. Franks et al.   Annual Review of Genetics

The shell-forming proteome ofLottia giganteareveals both deep conservations and lineage-specific novelties

(2012) Benjamin Marie et al.   FEBS Journal

Forecasting extinction risk of ectotherms under climate warming: an evolutionary perspective

(2012) Richard J. Walters et al.   FUNCTIONAL ECOLOGY

Streaming fragment assignment for real-time analysis of sequencing experiments

(2012) Adam Roberts et al.   NATURE METHODS

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

(2012) Davis J. McCarthy et al.   NUCLEIC ACIDS RESEARCH

Three decades of high-resolution coastal sea surface temperatures reveal more than warming

(2012) Fernando P. Lima et al.   Nature Communications

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Management of cytoskeleton architecture by molecular chaperones and immunophilins

(2011) Héctor R. Quintá et al.   CELLULAR SIGNALLING

Response of intertidal populations to climate: Effects of extreme events versus long term change

(2011) David S. Wethey et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Side matters: Microhabitat influence on intertidal heat stress over a large geographical scale

(2011) Rui Seabra et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Robolimpets: measuring intertidal body temperatures using biomimetic loggers

(2011) Fernando P. Lima et al.   LIMNOLOGY AND OCEANOGRAPHY-METHODS

Rocky intertidal temperature variability along the southeast coast of Australia: comparing data from in situ loggers, satellite-derived SST and terrestrial weather stations

(2011) JA Lathlean et al.   MARINE ECOLOGY PROGRESS SERIES

Interactive effects of losing key grazers and ecosystem engineers vary with environmental context

(2011) TP Crowe et al.   MARINE ECOLOGY PROGRESS SERIES

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

Physiological Responses in a Variable Environment: Relationships between Metabolism, Hsp and Thermotolerance in an Intertidal-Subtidal Species

(2011) Yun-wei Dong et al.   PLoS One

Local Adaptation in Marine Invertebrates

(2010) Eric Sanford et al.   Annual Review of Marine Science

Living in the Now: Physiological Mechanisms to Tolerate a Rapidly Changing Environment

(2010) Gretchen E. Hofmann et al.   Annual Review of Physiology

Variation in the heat shock response and its implication for predicting the effect of global climate change on species' biogeographical distribution ranges and metabolic costs

(2010) L. Tomanek   JOURNAL OF EXPERIMENTAL BIOLOGY

The proteomic response of the mussel congeners Mytilus galloprovincialis and M. trossulus to acute heat stress: implications for thermal tolerance limits and metabolic costs of thermal stress

(2010) L. Tomanek et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

On-line expectation-maximization algorithm for latent data models

(2009) Olivier Cappé et al.   JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY

Seasonal and latitudinal acclimatization of cardiac transcriptome responses to thermal stress in porcelain crabs, Petrolisthes cinctipes

(2009) JONATHON H. STILLMAN et al.   MOLECULAR ECOLOGY

Effects of thermal and osmotic stress on growth, osmoregulation and Hsp70 in sea cucumber (Apostichopus japonicus Selenka)

(2008) Yunwei Dong et al.   AQUACULTURE

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

COMPARATIVE ECOLOGY OF NORTH ATLANTIC SHORES: DO DIFFERENCES IN PLAYERS MATTER FOR PROCESS?

(2008) Stuart R. Jenkins et al.   ECOLOGY

Predation by small mobile aquatic predators regulates populations of the intertidal limpet Patella vulgata (L.)

(2008) A.C.F. Silva et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY