标题
Novel Insights into the Pig Gut Microbiome Using Metagenome-Assembled Genomes
作者
关键词
-
出版物
Microbiology Spectrum
Volume -, Issue -, Pages -
出版商
American Society for Microbiology
发表日期
2022-07-26
DOI
10.1128/spectrum.02380-22
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Archaeal and Bacterial Metagenome-Assembled Genome Sequences Derived from Pig Feces
- (2022) Matthew Crossfield et al. Microbiology Resource Announcements
- Extensive metagenomic analysis of the porcine gut resistome to identify indicators reflecting antimicrobial resistance
- (2022) Yunyan Zhou et al. Microbiome
- Resistance determinants and their genetic context in enterobacteria from a longitudinal study of pigs reared under various husbandry conditions
- (2021) Dominic Poulin-Laprade et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Metagenomics of antimicrobial and heavy metal resistance in the cecal microbiome of fattening pigs raised without antibiotics
- (2021) Paiboon Tunsagool et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Expanded catalog of microbial genes and metagenome-assembled genomes from the pig gut microbiome
- (2021) Congying Chen et al. Nature Communications
- Evolution of the Gut Microbiota and Its Fermentation Characteristics of Ningxiang Pigs at the Young Stage
- (2021) Hao Li et al. Animals
- Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation
- (2021) Ivica Letunic et al. NUCLEIC ACIDS RESEARCH
- Culturing Human Gut Microbiomes in the Laboratory
- (2021) Simone Renwick et al. Annual Review of Microbiology
- Dysosmobacter welbionis is a newly isolated human commensal bacterium preventing diet-induced obesity and metabolic disorders in mice
- (2021) Tiphaine Le Roy et al. GUT
- Polysaccharide degradation by the Bacteroidetes: mechanisms and nomenclature
- (2021) Lauren S. McKee et al. Environmental Microbiology Reports
- Microbial sulfate reduction by Desulfovibrio is an important source of hydrogen sulfide from a large swine finishing facility
- (2021) Olga V. Karnachuk et al. Scientific Reports
- An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastrointestinal microbiome of ruminants
- (2021) Fei Xie et al. Microbiome
- Post-weaning shifts in microbiome composition and metabolism revealed by over 25 000 pig gut metagenome-assembled genomes
- (2021) Daniela Gaio et al. Microbial Genomics
- Metagenomic Sequencing Analysis of the Effects of Colistin Sulfate on the Pig Gut Microbiome
- (2021) Ling Guo et al. Frontiers in Veterinary Science
- Pathogenic investigations of Streptococcus pasteurianus , an underreported zoonotic pathogen, isolated from a diseased piglet with meningitis
- (2021) Shuoyue Wang et al. Transboundary and Emerging Diseases
- Multivariable association discovery in population-scale meta-omics studies
- (2021) Himel Mallick et al. PLoS Computational Biology
- Xylan alleviates dietary fiber deprivation-induced dysbiosis by selectively promoting Bifidobacterium pseudocatenulatum in pigs
- (2021) Zhenyu Wang et al. Microbiome
- Weaning Age and Its Effect on the Development of the Swine Gut Microbiome and Resistome
- (2021) Devin B. Holman et al. mSystems
- Resistance to change: AMR gene dynamics on a commercial pig farm with high antimicrobial usage
- (2020) Jolinda Pollock et al. Scientific Reports
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0
- (2020) Francesco Asnicar et al. Nature Communications
- DRAM for distilling microbial metabolism to automate the curation of microbiome function
- (2020) Michael Shaffer et al. NUCLEIC ACIDS RESEARCH
- An improved pig reference genome sequence to enable pig genetics and genomics research
- (2020) Amanda Warr et al. GigaScience
- Metagenome-assembled genome binning methods with short reads disproportionately fail for plasmids and genomic Islands
- (2020) Finlay Maguire et al. Microbial Genomics
- Metagenomic reconstructions of gut microbial metabolism in weanling pigs
- (2019) Weilan Wang et al. Microbiome
- Exploring the Fecal Microbial Composition and Metagenomic Functional Capacities Associated With Feed Efficiency in Commercial DLY Pigs
- (2019) Jianping Quan et al. Frontiers in Microbiology
- Structures and characteristics of carbohydrates in diets fed to pigs: a review
- (2019) Diego M. D. L. Navarro et al. Journal of Animal Science and Biotechnology
- Dysosmobacter welbionis gen. nov., sp. nov., isolated from human faeces and emended description of the genus Oscillibacter
- (2019) Tiphaine Le Roy et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
- (2019) Dongwan D. Kang et al. PeerJ
- Longitudinal investigation of the swine gut microbiome from birth to market reveals stage and growth performance associated bacteria
- (2019) Xiaofan Wang et al. Microbiome
- Compendium of 4,941 rumen metagenome-assembled genomes for rumen microbiome biology and enzyme discovery
- (2019) Robert D. Stewart et al. NATURE BIOTECHNOLOGY
- Global trends in antimicrobial resistance in animals in low- and middle-income countries
- (2019) Thomas P. Van Boeckel et al. SCIENCE
- CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database
- (2019) Brian P Alcock et al. NUCLEIC ACIDS RESEARCH
- Interactions between host and gut microbiota in domestic pigs: a review
- (2019) Yadnyavalkya Patil et al. Gut Microbes
- Microbiome profiling of commercial pigs from farrow to finish
- (2018) Brenda De Rodas et al. JOURNAL OF ANIMAL SCIENCE
- dbCAN2: a meta server for automated carbohydrate-active enzyme annotation
- (2018) Han Zhang et al. NUCLEIC ACIDS RESEARCH
- Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries
- (2018) Patrick Munk et al. Nature Microbiology
- Global trends in infectious diseases of swine
- (2018) Kimberly VanderWaal et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Impact of Diet-Modulated Butyrate Production on Intestinal Barrier Function and Inflammation
- (2018) Knud Bach Knudsen et al. Nutrients
- dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication
- (2017) Matthew R Olm et al. ISME Journal
- Probiotic roles ofLactobacillussp. in swine: insights from gut microbiota
- (2017) V.D.V. Valeriano et al. JOURNAL OF APPLIED MICROBIOLOGY
- Polysaccharide Utilization Loci: Fueling Microbial Communities
- (2017) Julie M. Grondin et al. JOURNAL OF BACTERIOLOGY
- Metagenomic Analysis of Cecal Microbiome Identified Microbiota and Functional Capacities Associated with Feed Efficiency in Landrace Finishing Pigs
- (2017) Zhen Tan et al. Frontiers in Microbiology
- Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life
- (2017) Donovan H. Parks et al. Nature Microbiology
- Meta-analysis To Define a Core Microbiota in the Swine Gut
- (2017) Devin B. Holman et al. mSystems
- Addition of arabinoxylan and mixed linkage glucans in porcine diets affects the large intestinal bacterial populations
- (2016) John B. Gorham et al. EUROPEAN JOURNAL OF NUTRITION
- Bifidobacteria and Butyrate-Producing Colon Bacteria: Importance and Strategies for Their Stimulation in the Human Gut
- (2016) Audrey Rivière et al. Frontiers in Microbiology
- A reference gene catalogue of the pig gut microbiome
- (2016) Liang Xiao et al. Nature Microbiology
- MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
- (2015) Dinghua Li et al. BIOINFORMATICS
- CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
- (2015) Donovan H. Parks et al. GENOME RESEARCH
- Quantification of short-chain fatty acids and energy production from hindgut fermentation in cannulated pigs fed graded levels of wheat bran1
- (2015) E. A. Iyayi et al. JOURNAL OF ANIMAL SCIENCE
- Early-life establishment of the swine gut microbiome and impact on host phenotypes
- (2015) Núria Mach et al. Environmental Microbiology Reports
- Resistant starch diet induces change in the swine microbiome and a predominance of beneficial bacterial populations
- (2015) Özgün C O Umu et al. Microbiome
- Prokka: rapid prokaryotic genome annotation
- (2014) T. Seemann BIOINFORMATICS
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Revealing the Bacterial Butyrate Synthesis Pathways by Analyzing (Meta)genomic Data
- (2014) M. Vital et al. mBio
- Impact of subtherapeutic administration of tylosin and chlortetracycline on antimicrobial resistance in farrow-to-finish swine
- (2013) Devin B. Holman et al. FEMS MICROBIOLOGY ECOLOGY
- The role of short-chain fatty acids in the interplay between diet, gut microbiota, and host energy metabolism
- (2013) Gijs den Besten et al. JOURNAL OF LIPID RESEARCH
- The carbohydrate-active enzymes database (CAZy) in 2013
- (2013) Vincent Lombard et al. NUCLEIC ACIDS RESEARCH
- Analysis of a Clostridium difficile PCR ribotype 078 100 kilobase island reveals the presence of a novel transposon, Tn6164
- (2012) Jeroen Corver et al. BMC MICROBIOLOGY
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Two Novel Antibiotic Resistance Genes, tet(44) and ant(6)-Ib, Are Located within a Transferable Pathogenicity Island in Campylobacter fetus subsp. fetus
- (2010) C. Abril et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Transposases are the most abundant, most ubiquitous genes in nature
- (2010) Ramy K. Aziz et al. NUCLEIC ACIDS RESEARCH
- tISCpe8, an IS1595-Family Lincomycin Resistance Element Located on a Conjugative Plasmid in Clostridium perfringens
- (2009) D. Lyras et al. JOURNAL OF BACTERIOLOGY
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