Resistant starch diet induces change in the swine microbiome and a predominance of beneficial bacterial populations

In vivo degradation of alginate in the presence and in the absence of resistant starch

(2015) Melliana Jonathan et al.   FOOD CHEMISTRY

Effects of alginate and resistant starch on feeding patterns, behaviour and performance in ad libitum-fed growing pigs

(2014) C. Souza da Silva et al.   Animal

STAMP: statistical analysis of taxonomic and functional profiles

(2014) Donovan H. Parks et al.   BIOINFORMATICS

Potential applications of gut microbiota to control human physiology

(2013) Özgün Candan Onarman Umu et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Gut microbiota and metabolic disorders: how prebiotic can work?

(2013) Nathalie M. Delzenne et al.   BRITISH JOURNAL OF NUTRITION

Linking the gut microbiota to human health

(2013) Virginia Robles Alonso et al.   BRITISH JOURNAL OF NUTRITION

Clostridium difficile PCR ribotype 046 is common among neonatal pigs and humans in Sweden

(2013) T. Norén et al.   CLINICAL MICROBIOLOGY AND INFECTION

Major faecal microbiota shifts in composition and diversity with age in a geographically restricted cohort of mothers and their children

(2013) Ekaterina Avershina et al.   FEMS MICROBIOLOGY ECOLOGY

Resistant Starch Induces Catabolic but Suppresses Immune and Cell Division Pathways and Changes the Microbiome in the Proximal Colon of Male Pigs

(2013) Daniëlle Haenen et al.   JOURNAL OF NUTRITION

A Diet High in Resistant Starch Modulates Microbiota Composition, SCFA Concentrations, and Gene Expression in Pig Intestine

(2013) Daniëlle Haenen et al.   JOURNAL OF NUTRITION

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

Use of pigs as a potential model for research into dietary modulation of the human gut microbiota

(2013) Sonja N. Heinritz et al.   NUTRITION RESEARCH REVIEWS

Diet-Microbiota Interactions and Their Implications for Healthy Living

(2013) Ian Jeffery et al.   Nutrients

Fiber and Prebiotics: Mechanisms and Health Benefits

(2013) Joanne Slavin   Nutrients

From meta-omics to causality: experimental models for human microbiome research

(2013) Joëlle V Fritz et al.   Microbiome

FLX Pyrosequencing Analysis of the Effects of the Brown-Algal Fermentable Polysaccharides Alginate and Laminaran on Rat Cecal Microbiotas

(2012) Choa An et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Efficient statistical significance approximation for local similarity analysis of high-throughput time series data

(2012) Li C. Xia et al.   BIOINFORMATICS

The intestinal microbiota in aged mice is modulated by dietary resistant starch and correlated with improvements in host responses

(2012) Sybille Tachon et al.   FEMS MICROBIOLOGY ECOLOGY

Suppression of Clostridium difficile in the Gastrointestinal Tracts of Germfree Mice Inoculated with a Murine Isolate from the Family Lachnospiraceae

(2012) Angela E. Reeves et al.   INFECTION AND IMMUNITY

Ruminococcus bromii is a keystone species for the degradation of resistant starch in the human colon

(2012) Xiaolei Ze et al.   ISME Journal

Diversity, stability and resilience of the human gut microbiota

(2012) Catherine A. Lozupone et al.   NATURE

Married to our gut microbiota

(2012) Katrina Ray   Nature Reviews Gastroenterology & Hepatology

The impact of nutrition on the human microbiome

(2012) Harry J Flint   NUTRITION REVIEWS

Effects of dietary fibers with different physicochemical properties on feeding motivation in adult female pigs

(2012) Carol Souza da Silva et al.   PHYSIOLOGY & BEHAVIOR

In vitro fermentation and prebiotic potential of novel low molecular weight polysaccharides derived from agar and alginate seaweeds

(2011) Priya Ramnani et al.   ANAEROBE

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

The Changing Epidemiology of Clostridium difficile Infections

(2010) J. Freeman et al.   CLINICAL MICROBIOLOGY REVIEWS

Dominant and diet-responsive groups of bacteria within the human colonic microbiota

(2010) Alan W Walker et al.   ISME Journal

The effect of gilt age at first estrus and breeding on third estrus on sow body weight changes and long-term reproductive performance1

(2010) J. L. Patterson et al.   JOURNAL OF ANIMAL SCIENCE

High-Yield and Phylogenetically Robust Methods of DNA Recovery for Analysis of Microbial Biofilms Adherent to Plant Biomass in the Herbivore Gut

(2010) Carly P. Rosewarne et al.   MICROBIAL ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Resistant Starches Types 2 and 4 Have Differential Effects on the Composition of the Fecal Microbiota in Human Subjects

(2010) Inés Martínez et al.   PLoS One

Succession of microbial consortia in the developing infant gut microbiome

(2010) J. E. Koenig et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

An Efficient RNA Extraction Method for Estimating Gut Microbial Diversity by Polymerase Chain Reaction

(2009) Seungha Kang et al.   CURRENT MICROBIOLOGY

The key role alginates play in health

(2009) Peter W. Dettmar et al.   FOOD HYDROCOLLOIDS

Polysaccharide utilization by gut bacteria: potential for new insights from genomic analysis

(2008) Harry J. Flint et al.   NATURE REVIEWS MICROBIOLOGY