Systematic strategies for developing phage resistant Escherichia coli strains

Genetically stable CRISPR-based kill switches for engineered microbes

(2022) Austin G. Rottinghaus et al.   Nature Communications

SspABCD-SspFGH Constitutes a New Type of DNA Phosphorothioate-Based Bacterial Defense System

(2021) Shiwei Wang et al.   mBio

Systematic exploration of Escherichia coli phage–host interactions with the BASEL phage collection

(2021) Enea Maffei et al.   PLOS BIOLOGY

The arms race between bacteria and their phage foes

(2020) Hannah G. Hampton et al.   NATURE

Synthetic Cassettes for pH-Mediated Sensing, Counting, and Containment

(2020) Finn Stirling et al.   Cell Reports

SspABCD–SspE is a phosphorothioation-sensing bacterial defence system with broad anti-phage activities

(2020) Xiaolin Xiong et al.   Nature Microbiology

A programmable CRISPR/Cas9-based phage defense system for Escherichia coli BL21(DE3)

(2020) Li Liu et al.   Microbial Cell Factories

High-throughput mapping of the phage resistance landscape in E. coli

(2020) Vivek K. Mutalik et al.   PLOS BIOLOGY

A new type of DNA phosphorothioation-based antiviral system in archaea

(2019) Lei Xiong et al.   Nature Communications

Structure of the SARS-CoV nsp12 polymerase bound to nsp7 and nsp8 co-factors

(2019) Robert N. Kirchdoerfer et al.   Nature Communications

Emergence of plasmid stability under non-selective conditions maintains antibiotic resistance

(2019) Tanita Wein et al.   Nature Communications

The pan-immune system of bacteria: antiviral defence as a community resource

(2019) Aude Bernheim et al.   NATURE REVIEWS MICROBIOLOGY

Phage puppet masters of the marine microbial realm

(2018) Mya Breitbart et al.   Nature Microbiology

BREX system of Escherichia coli distinguishes self from non-self by methylation of a specific DNA site

(2018) Julia Gordeeva et al.   NUCLEIC ACIDS RESEARCH

DISARM is a widespread bacterial defence system with broad anti-phage activities

(2017) Gal Ofir et al.   Nature Microbiology

A Klebsiella pneumoniae bacteriophage and its effect on 1,3-propanediol fermentation

(2016) Juntao Shen et al.   PROCESS BIOCHEMISTRY

Rapid and Efficient One-Step Metabolic Pathway Integration in E. coli

(2016) Marcelo C. Bassalo et al.   ACS Synthetic Biology

'Deadman' and 'Passcode' microbial kill switches for bacterial containment

(2015) Clement T Y Chan et al.   Nature Chemical Biology

BREX is a novel phage resistance system widespread in microbial genomes

(2014) T. Goldfarb et al.   EMBO JOURNAL

Bacteriophages: an underestimated role in human and animal health?

(2014) Marianne De Paepe et al.   Frontiers in Cellular and Infection Microbiology

Remarkable Mechanisms in Microbes to Resist Phage Infections

(2014) Ron L. Dy et al.   Annual Review of Virology

CRISPR-Mediated Adaptive Immune Systems in Bacteria and Archaea

(2013) Rotem Sorek et al.   Annual Review of Biochemistry

Biodiversity of lactococcal bacteriophages isolated from 3 Gouda-type cheese-producing plants

(2013) James Murphy et al.   JOURNAL OF DAIRY SCIENCE

Revenge of the phages: defeating bacterial defences

(2013) Julie E. Samson et al.   NATURE REVIEWS MICROBIOLOGY

To be or not to be: regulation of restriction–modification systems and other toxin–antitoxin systems

(2013) Iwona Mruk et al.   NUCLEIC ACIDS RESEARCH

Highlights of the DNA cutters: a short history of the restriction enzymes

(2013) Wil A. M. Loenen et al.   NUCLEIC ACIDS RESEARCH

Implementation of stable and complex biological systems through recombinase-assisted genome engineering

(2013) Christine Nicole S. Santos et al.   Nature Communications

Bacteriophage Ecology in a Commercial Cucumber Fermentation

(2012) Z. Lu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacteriophages in Food Fermentations: New Frontiers in a Continuous Arms Race

(2012) Julie E. Samson et al.   Annual Review of Food Science and Technology

Bacteriophages of lactic acid bacteria and their impact on milk fermentations

(2011) Josiane E Garneau et al.   Microbial Cell Factories

The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA

(2010) Josiane E. Garneau et al.   NATURE

A novel host-specific restriction system associated with DNA backbone S-modification in Salmonella

(2010) Tiegang Xu et al.   NUCLEIC ACIDS RESEARCH

D-Amino acid oxidase: Physiological role and applications

(2009) S. V. Khoronenkova et al.   BIOCHEMISTRY-MOSCOW

From damaged genome to cell surface: transcriptome changes during bacterial cell death triggered by loss of a restriction–modification gene complex

(2009) Yoko Asakura et al.   NUCLEIC ACIDS RESEARCH

The phage abortive infection system, ToxIN, functions as a protein–RNA toxin–antitoxin pair

(2009) Peter C. Fineran et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

AbiV, a Novel Antiphage Abortive Infection Mechanism on the Chromosome of Lactococcus lactis subsp. cremoris MG1363

(2008) J. Haaber et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

High Soluble Expression of d-Amino Acid Oxidase in Escherichia coli Regulated by a Native Promoter

(2008) Yangqiu Liu et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Antibiotic marker modifications of λ Red and FLP helper plasmids, pKD46 and pCP20, for inactivation of chromosomal genes using PCR products in multidrug-resistant strains

(2008) Benoît Doublet et al.   JOURNAL OF MICROBIOLOGICAL METHODS

CRISPR — a widespread system that provides acquired resistance against phages in bacteria and archaea

(2007) Rotem Sorek et al.   NATURE REVIEWS MICROBIOLOGY