Islet autoantibody seroconversion in type-1 diabetes is associated with metagenome-assembled genomes in infant gut microbiomes
出版年份 2022 全文链接
标题
Islet autoantibody seroconversion in type-1 diabetes is associated with metagenome-assembled genomes in infant gut microbiomes
作者
关键词
-
出版物
Nature Communications
Volume 13, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2022-06-21
DOI
10.1038/s41467-022-31227-1
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- An Age-Related Exponential Decline in the Risk of Multiple Islet Autoantibody Seroconversion During Childhood
- (2021) Ezio Bonifacio et al. DIABETES CARE
- The Role of Gut Microbiota and Environmental Factors in Type 1 Diabetes Pathogenesis
- (2020) Sandra Dedrick et al. Frontiers in Endocrinology
- Applying the core microbiome to understand host-microbe systems
- (2020) Alice Risely JOURNAL OF ANIMAL ECOLOGY
- Hydrogen sulfide toxicity in the gut environment: Meta-analysis of sulfate-reducing and lactic acid bacteria in inflammatory processes
- (2020) Dani Dordević et al. Journal of Advanced Research
- Gut Microbiota in T1DM-Onset Pediatric Patients: Machine-Learning Algorithms to Classify Microorganisms as Disease Linked
- (2020) Roberto Biassoni et al. JOURNAL OF CLINICAL ENDOCRINOLOGY & METABOLISM
- Computational Methods for Strain-Level Microbial Detection in Colony and Metagenome Sequencing Data
- (2020) Christine Anyansi et al. Frontiers in Microbiology
- Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle
- (2019) Edoardo Pasolli et al. CELL
- Novel insights from uncultivated genomes of the global human gut microbiome
- (2019) Stephen Nayfach et al. NATURE
- A new genomic blueprint of the human gut microbiota
- (2019) Alexandre Almeida et al. NATURE
- Dietary Factors in Sulfur Metabolism and Pathogenesis of Ulcerative Colitis
- (2019) Levi M. Teigen et al. Nutrients
- Core Gut Bacteria Analysis of Healthy Mice
- (2019) Jingjing Wang et al. Frontiers in Microbiology
- Type 1 Diabetes: an Association Between Autoimmunity, the Dynamics of Gut Amyloid-producing E. coli and Their Phages
- (2019) George Tetz et al. Scientific Reports
- MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
- (2019) Dongwan D. Kang et al. PeerJ
- Hydrogen Sulfide as a Toxic Product in the Small–Large Intestine Axis and its Role in IBD Development
- (2019) Ivan Kushkevych et al. Journal of Clinical Medicine
- KofamKOALA: KEGG ortholog assignment based on profile HMM and adaptive score threshold
- (2019) Takuya Aramaki et al. BIOINFORMATICS
- Genetic risk for autoimmunity is associated with distinct changes in the human gut microbiome
- (2019) Jordan T. Russell et al. Nature Communications
- Nitrate induces a type 1 diabetic profile in alligator hatchlings
- (2018) Thea M. Edwards et al. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY
- Gut Microbiota and Type 1 Diabetes
- (2018) Hui Han et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Metagenomic analysis with strain-level resolution reveals fine-scale variation in the human pregnancy microbiome
- (2018) Daniela S. Aliaga Goltsman et al. GENOME RESEARCH
- OUP accepted manuscript
- (2018) NUCLEIC ACIDS RESEARCH
- Human-origin probiotic cocktail increases short-chain fatty acid production via modulation of mice and human gut microbiome
- (2018) Ravinder Nagpal et al. Scientific Reports
- The human gut pan-microbiome presents a compositional core formed by discrete phylogenetic units
- (2018) Daniel Aguirre de Cárcer Scientific Reports
- The human gut microbiome in early-onset type 1 diabetes from the TEDDY study
- (2018) Tommi Vatanen et al. NATURE
- Temporal development of the gut microbiome in early childhood from the TEDDY study
- (2018) Christopher J. Stewart et al. NATURE
- Microbial strain-level population structure and genetic diversity from metagenomes
- (2017) Duy Tin Truong et al. GENOME RESEARCH
- metaSPAdes: a new versatile metagenomic assembler
- (2017) Sergey Nurk et al. GENOME RESEARCH
- Sulfate-reducing bacteria stimulate gut immune responses and contribute to inflammation in experimental colitis
- (2017) Vanessa Ribeiro Figliuolo et al. LIFE SCIENCES
- Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
- (2017) Robert M Bowers et al. NATURE BIOTECHNOLOGY
- The MetaCyc database of metabolic pathways and enzymes
- (2017) Ron Caspi et al. NUCLEIC ACIDS RESEARCH
- Strain-resolved analysis of hospital rooms and infants reveals overlap between the human and room microbiome
- (2017) Brandon Brooks et al. Nature Communications
- Leaky Gut As a Danger Signal for Autoimmune Diseases
- (2017) Qinghui Mu et al. Frontiers in Immunology
- Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life
- (2017) Donovan H. Parks et al. Nature Microbiology
- Variation in Microbiome LPS Immunogenicity Contributes to Autoimmunity in Humans
- (2016) Tommi Vatanen et al. CELL
- An integrated metagenomics pipeline for strain profiling reveals novel patterns of bacterial transmission and biogeography
- (2016) Stephen Nayfach et al. GENOME RESEARCH
- Environmental risk factors for type 1 diabetes
- (2016) Marian Rewers et al. LANCET
- Supplementation with Lactobacillus plantarum WCFS1 Prevents Decline of Mucus Barrier in Colon of Accelerated Aging Ercc1−/Δ7 Mice
- (2016) Adriaan A. van Beek et al. Frontiers in Immunology
- BPGA- an ultra-fast pan-genome analysis pipeline
- (2016) Narendrakumar M. Chaudhari et al. Scientific Reports
- The Dynamics of the Human Infant Gut Microbiome in Development and in Progression toward Type 1 Diabetes
- (2015) Aleksandar D. Kostic et al. Cell Host & Microbe
- The Streetlight Effect in Type 1 Diabetes
- (2015) Manuela Battaglia et al. DIABETES
- Insights from 20 years of bacterial genome sequencing
- (2015) Miriam Land et al. FUNCTIONAL & INTEGRATIVE GENOMICS
- MetaPhlAn2 for enhanced metagenomic taxonomic profiling
- (2015) Duy Tin Truong et al. NATURE METHODS
- Gut microbiota facilitates dietary heme-induced epithelial hyperproliferation by opening the mucus barrier in colon
- (2015) Noortje Ijssennagger et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Functional phylogenomics analysis of bacteria and archaea using consistent genome annotation with UniFam
- (2014) Juanjuan Chai et al. BMC EVOLUTIONARY BIOLOGY
- The intestinal microbiome in type 1 diabetes
- (2014) J. L. Dunne et al. CLINICAL AND EXPERIMENTAL IMMUNOLOGY
- Fast and sensitive protein alignment using DIAMOND
- (2014) Benjamin Buchfink et al. NATURE METHODS
- A Linear-Time Algorithm for Gaussian and Non-Gaussian Trait Evolution Models
- (2014) Lam si Tung Ho et al. SYSTEMATIC BIOLOGY
- Unifying the analysis of high-throughput sequencing datasets: characterizing RNA-seq, 16S rRNA gene sequencing and selective growth experiments by compositional data analysis
- (2014) Andrew D Fernandes et al. Microbiome
- Seroconversion to Multiple Islet Autoantibodies and Risk of Progression to Diabetes in Children
- (2013) Anette G. Ziegler et al. JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION
- Type 1 diabetes
- (2013) Mark A Atkinson et al. LANCET
- Increased circulatory levels of lipopolysaccharide (LPS) and zonulin signify novel biomarkers of proinflammation in patients with type 2 diabetes
- (2013) B. Jayashree et al. MOLECULAR AND CELLULAR BIOCHEMISTRY
- Metagenomic species profiling using universal phylogenetic marker genes
- (2013) Shinichi Sunagawa et al. NATURE METHODS
- PATRIC, the bacterial bioinformatics database and analysis resource
- (2013) Alice R. Wattam et al. NUCLEIC ACIDS RESEARCH
- PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes
- (2013) Nicola Segata et al. Nature Communications
- Removal of Bovine Insulin From Cow's Milk Formula and Early Initiation of Beta-Cell Autoimmunity in the FINDIA Pilot Study
- (2012) Outi Vaarala et al. ARCHIVES OF PEDIATRICS & ADOLESCENT MEDICINE
- Ultrafast clustering algorithms for metagenomic sequence analysis
- (2012) W. Li et al. BRIEFINGS IN BIOINFORMATICS
- A Core Human Microbiome as Viewed through 16S rRNA Sequence Clusters
- (2012) Susan M. Huse et al. PLoS One
- Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome
- (2012) Sahar Abubucker et al. PLoS Computational Biology
- Roles of Hydrogen Sulfide in the Pathogenesis of Diabetes Mellitus and Its Complications
- (2011) Csaba Szabo ANTIOXIDANTS & REDOX SIGNALING
- Beyond the Venn diagram: the hunt for a core microbiome
- (2011) Ashley Shade et al. ENVIRONMENTAL MICROBIOLOGY
- Prodigal: prokaryotic gene recognition and translation initiation site identification
- (2010) Doug Hyatt et al. BMC BIOINFORMATICS
- Toward defining the autoimmune microbiome for type 1 diabetes
- (2010) Adriana Giongo et al. ISME Journal
- A human gut microbial gene catalogue established by metagenomic sequencing
- (2010) Junjie Qin et al. NATURE
- Phylogenetic Logistic Regression for Binary Dependent Variables
- (2009) Anthony R. Ives et al. SYSTEMATIC BIOLOGY
- A core gut microbiome in obese and lean twins
- (2008) Peter J. Turnbaugh et al. NATURE
Become a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get StartedAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started