Ultrasensitive Ribo-seq reveals translational landscapes during mammalian oocyte-to-embryo transition and pre-implantation development
出版年份 2022 全文链接
标题
Ultrasensitive Ribo-seq reveals translational landscapes during mammalian oocyte-to-embryo transition and pre-implantation development
作者
关键词
-
出版物
NATURE CELL BIOLOGY
Volume 24, Issue 6, Pages 968-980
出版商
Springer Science and Business Media LLC
发表日期
2022-06-14
DOI
10.1038/s41556-022-00928-6
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Single-cell Ribo-seq reveals cell cycle-dependent translational pausing
- (2021) Michael VanInsberghe et al. NATURE
- The molecular basis of coupling between poly(A)-tail length and translational efficiency
- (2021) Kehui Xiang et al. eLife
- Identifying the Translatome of Mouse NEBD-Stage Oocytes via SSP-Profiling; A Novel Polysome Fractionation Method
- (2020) Tomas Masek et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- The Dynamics of Cytoplasmic mRNA Metabolism
- (2020) Timothy J. Eisen et al. MOLECULAR CELL
- Genome-wide analysis reveals a switch in the translational program upon oocyte meiotic resumption
- (2020) Xuan G Luong et al. NUCLEIC ACIDS RESEARCH
- Essential functions of the CNOT7/8 catalytic subunits of the CCR4-NOT complex in mRNA regulation and cell viability
- (2020) Dina Mostafa et al. RNA Biology
- RiboMiner: a toolset for mining multi-dimensional features of the translatome with ribosome profiling data
- (2020) Fajin Li et al. BMC BIOINFORMATICS
- Heterochromatin establishment during early mammalian development is regulated by pericentromeric RNA and characterized by non-repressive H3K9me3
- (2020) Adam Burton et al. NATURE CELL BIOLOGY
- The art of oocyte meiotic arrest regulation
- (2019) Bo Pan et al. Reproductive Biology and Endocrinology
- The translational functions of embryonic poly(A)‐binding protein during gametogenesis and early embryo development
- (2019) Saffet Ozturk MOLECULAR REPRODUCTION AND DEVELOPMENT
- The role and mechanisms of DNA methylation in the oocyte
- (2019) Gintarė Sendžikaitė et al. Essays in Biochemistry
- Poly(A) inclusive RNA isoform sequencing (PAIso−seq) reveals wide-spread non-adenosine residues within RNA poly(A) tails
- (2019) Yusheng Liu et al. Nature Communications
- An integrated genome-wide multi-omics analysis of gene expression dynamics in the preimplantation mouse embryo
- (2019) Steffen Israel et al. Scientific Reports
- Minimap2: pairwise alignment for nucleotide sequences
- (2018) Heng Li BIOINFORMATICS
- The oocyte-to-embryo transition in mouse: past, present, and future†
- (2018) Richard M Schultz et al. BIOLOGY OF REPRODUCTION
- Acquisition of oocyte competence to develop as an embryo: integrated nuclear and cytoplasmic events
- (2018) Marco Conti et al. HUMAN REPRODUCTION UPDATE
- mRNA Deadenylation Is Coupled to Translation Rates by the Differential Activities of Ccr4-Not Nucleases
- (2018) Michael W. Webster et al. MOLECULAR CELL
- Terminal Uridylyltransferases Execute Programmed Clearance of Maternal Transcriptome in Vertebrate Embryos
- (2018) Hyeshik Chang et al. MOLECULAR CELL
- De novo annotation and characterization of the translatome with ribosome profiling data
- (2018) Zhengtao Xiao et al. NUCLEIC ACIDS RESEARCH
- CNOT6L couples the selective degradation of maternal transcripts to meiotic cell cycle progression in mouse oocyte
- (2018) Qian‐Qian Sha et al. EMBO JOURNAL
- IFITM3 directly engages and shuttles incoming virus particles to lysosomes
- (2018) Jennifer S. Spence et al. Nature Chemical Biology
- A combinatorial code for mRNA 3′-UTR-mediated translational control in the mouse oocyte
- (2018) Xing-Xing Dai et al. NUCLEIC ACIDS RESEARCH
- Germ-Cell-Specific Inflammasome Component NLRP14 Negatively Regulates Cytosolic Nucleic Acid Sensing to Promote Fertilization
- (2017) Takayuki Abe et al. IMMUNITY
- Transcriptome-wide measurement of translation by ribosome profiling
- (2017) Nicholas J. McGlincy et al. METHODS
- mRNA 3′ uridylation and poly(A) tail length sculpt the mammalian maternal transcriptome
- (2017) Marcos Morgan et al. NATURE
- Genome-wide identification and differential analysis of translational initiation
- (2017) Peng Zhang et al. Nature Communications
- Protein Expression Landscape of Mouse Embryos during Pre-implantation Development
- (2017) Yawei Gao et al. Cell Reports
- mTAIL-seq reveals dynamic poly(A) tail regulation in oocyte-to-embryo development
- (2016) Jaechul Lim et al. GENES & DEVELOPMENT
- Identification of Maturation-Specific Proteins by Single-Cell Proteomics of Human Oocytes
- (2016) Irma Virant-Klun et al. MOLECULAR & CELLULAR PROTEOMICS
- Allelic reprogramming of the histone modification H3K4me3 in early mammalian development
- (2016) Bingjie Zhang et al. NATURE
- The landscape of accessible chromatin in mammalian preimplantation embryos
- (2016) Jingyi Wu et al. NATURE
- BTG4 is a meiotic cell cycle–coupled maternal-zygotic-transition licensing factor in oocytes
- (2016) Chao Yu et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- F-BOX proteins in cancer cachexia and muscle wasting: Emerging regulators and therapeutic opportunities
- (2016) Ammar Sukari et al. SEMINARS IN CANCER BIOLOGY
- BTG4 is a key regulator for maternal mRNA clearance during mouse early embryogenesis
- (2016) Yusheng Liu et al. Journal of Molecular Cell Biology
- BTG4 is a meiotic cell cycle–coupled maternal-zygotic-transition licensing factor in oocytes
- (2016) Chao Yu et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- The Ccr4-Not complex is a key regulator of eukaryotic gene expression
- (2016) Martine A. Collart Wiley Interdisciplinary Reviews-RNA
- mRNA poly(A)-tail changes specified by deadenylation broadly reshape translation in Drosophila oocytes and early embryos
- (2016) Stephen W Eichhorn et al. eLife
- Transient bursts of Zscan4 expression are accompanied by the rapid derepression of heterochromatin in mouse embryonic stem cells
- (2015) Tomohiko Akiyama et al. DNA RESEARCH
- The first murine zygotic transcription is promiscuous and uncoupled from splicing and 3' processing
- (2015) K.-i. Abe et al. EMBO JOURNAL
- Cbx2 Targets PRC1 to Constitutive Heterochromatin in Mouse Zygotes in a Parent-of-Origin-Dependent Manner
- (2015) Mathieu Tardat et al. MOLECULAR CELL
- Intrinsic retroviral reactivation in human preimplantation embryos and pluripotent cells
- (2015) Edward J. Grow et al. NATURE
- Zygotic Genome Activation During the Maternal-to-Zygotic Transition
- (2014) Miler T. Lee et al. Annual Review of Cell and Developmental Biology
- Role of the staphylococcal nuclease and tudor domain containing 1 in oncogenesis (Review)
- (2014) NIDHI JARIWALA et al. INTERNATIONAL JOURNAL OF ONCOLOGY
- Poly(A)-tail profiling reveals an embryonic switch in translational control
- (2014) Alexander O. Subtelny et al. NATURE
- Full-length RNA-seq from single cells using Smart-seq2
- (2014) Simone Picelli et al. Nature Protocols
- GW182 proteins cause PABP dissociation from silenced miRNA targets in the absence of deadenylation
- (2013) Latifa Zekri et al. EMBO JOURNAL
- NOT10 and C2orf29/NOT11 form a conserved module of the CCR4-NOT complex that docks onto the NOT1 N-terminal domain
- (2013) Praveen Bawankar et al. RNA Biology
- RSeQC: quality control of RNA-seq experiments
- (2012) Liguo Wang et al. BIOINFORMATICS
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments
- (2012) Nicholas T Ingolia et al. Nature Protocols
- Ribosome Profiling Shows That miR-430 Reduces Translation Before Causing mRNA Decay in Zebrafish
- (2012) A. A. Bazzini et al. SCIENCE
- Toward a Genome-Wide Landscape of Translational Control
- (2012) O. Larsson et al. Cold Spring Harbor Perspectives in Biology
- Genome-wide analysis of translation reveals a critical role for deleted in azoospermia-like (Dazl) at the oocyte-to-zygote transition
- (2011) J. Chen et al. GENES & DEVELOPMENT
- The role of Tet3 DNA dioxygenase in epigenetic reprogramming by oocytes
- (2011) Tian-Peng Gu et al. NATURE
- miRNA repression involves GW182-mediated recruitment of CCR4–NOT through conserved W-containing motifs
- (2011) Marina Chekulaeva et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Maternal control of early mouse development
- (2010) L. Li et al. DEVELOPMENT
- Translational Repression by Deadenylases
- (2010) Amy Cooke et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
- (2010) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- Proteome of mouse oocytes at different developmental stages
- (2010) Shufang Wang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling
- (2009) N. T. Ingolia et al. SCIENCE
- A Combinatorial Code for CPE-Mediated Translational Control
- (2008) Maria Piqué et al. CELL
Become a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get StartedAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started