Grey wolf genomic history reveals a dual ancestry of dogs

Dog domestication and the dual dispersal of people and dogs into the Americas

(2021) Angela R. Perri et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A minimally destructive protocol for DNA extraction from ancient teeth

(2021) Éadaoin Harney et al.   GENOME RESEARCH

A Fast and Efficient Single-stranded Genomic Library Preparation Method Optimized for Ancient DNA

(2021) Joshua D Kapp et al.   JOURNAL OF HEREDITY

Ancient horse genomes reveal the timing and extent of dispersals across the Bering Land Bridge

(2021) Alisa O. Vershinina et al.   MOLECULAR ECOLOGY

Ancient hybridization with an unknown population facilitated high altitude adaptation of canids

(2020) Ming-Shan Wang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Tracking human population structure through time from whole genome sequences

(2020) Ke Wang et al.   PLoS Genetics

Unexplained patterns of grey wolf Canis lupus natal dispersal

(2020) L. David Mech   MAMMAL REVIEW

Arctic-adapted dogs emerged at the Pleistocene–Holocene transition

(2020) Mikkel-Holger S. Sinding et al.   SCIENCE

Genomes of Pleistocene Siberian Wolves Uncover Multiple Extinct Wolf Lineages

(2020) Jazmín Ramos-Madrigal et al.   CURRENT BIOLOGY

Extended survival of Pleistocene Siberian wolves into the early 20th century on the island of Honshū

(2020) Jonas Niemann et al.   iScience

De Novo Mutation Rate Estimation in Wolves of Known Pedigree

(2019) Evan M Koch et al.   MOLECULAR BIOLOGY AND EVOLUTION

Whole genome sequencing of canids reveals genomic regions under selection and variants influencing morphology

(2019) Jocelyn Plassais et al.   Nature Communications

A method for genome-wide genealogy estimation for thousands of samples

(2019) Leo Speidel et al.   NATURE GENETICS

Widespread male sex bias in mammal fossil and museum collections

(2019) Graham Gower et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An approximate full-likelihood method for inferring selection and allele frequency trajectories from DNA sequence data

(2019) Aaron J. Stern et al.   PLoS Genetics

Ancient DNA suggests modern wolves trace their origin to a Late Pleistocene expansion from Beringia

(2019) Liisa Loog et al.   MOLECULAR ECOLOGY

A new look at an old dog: Bonn-Oberkassel reconsidered

(2018) Luc Janssens et al.   JOURNAL OF ARCHAEOLOGICAL SCIENCE

The evolutionary history of dogs in the Americas

(2018) Máire Ní Leathlobhair et al.   SCIENCE

Interspecific Gene Flow Shaped the Evolution of the Genus Canis

(2018) Shyam Gopalakrishnan et al.   CURRENT BIOLOGY

Direct-to-consumer DNA testing of 6,000 dogs reveals 98.6-kb duplication associated with blue eyes and heterochromia in Siberian Huskies

(2018) Petra E. Deane-Coe et al.   PLoS Genetics

Population genomics of grey wolves and wolf-like canids in North America

(2018) Mikkel-Holger S. Sinding et al.   PLoS Genetics

Hearing loss without overt metabolic acidosis in ATP6V1B1 deficient MRL mice, a new genetic model for non-syndromic deafness with enlarged vestibular aqueducts

(2017) Cong Tian et al.   HUMAN MOLECULAR GENETICS

Whole-Genome Sequencing of African Dogs Provides Insights into Adaptations against Tropical Parasites

(2017) Yan-Hu Liu et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ancient European dog genomes reveal continuity since the Early Neolithic

(2017) Laura R. Botigué et al.   Nature Communications

Genomic consequences of intensive inbreeding in an isolated wolf population

(2017) Marty Kardos et al.   Nature Ecology & Evolution

Genomic and archaeological evidence suggest a dual origin of domestic dogs

(2016) Laurent A. F. Frantz et al.   SCIENCE

Whole-genome sequence analysis shows that two endemic species of North American wolf are admixtures of the coyote and gray wolf

(2016) B. M. vonHoldt et al.   Science Advances

Linked genetic variants on chromosome 10 control ear morphology and body mass among dog breeds

(2015) Matthew Webster et al.   BMC GENOMICS

Out of southern East Asia: the natural history of domestic dogs across the world

(2015) Guo-Dong Wang et al.   CELL RESEARCH

Ancient Wolf Genome Reveals an Early Divergence of Domestic Dog Ancestors and Admixture into High-Latitude Breeds

(2015) Pontus Skoglund et al.   CURRENT BIOLOGY

Worldwide patterns of genomic variation and admixture in gray wolves

(2015) Zhenxin Fan et al.   GENOME RESEARCH

Massive migration from the steppe was a source for Indo-European languages in Europe

(2015) Wolfgang Haak et al.   NATURE

Genetic structure in village dogs reveals a Central Asian domestication origin

(2015) Laura M. Shannon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A stratigraphical basis for the Last Glacial Maximum (LGM)

(2015) Philip D. Hughes et al.   QUATERNARY INTERNATIONAL

Second-generation PLINK: rising to the challenge of larger and richer datasets

(2015) Christopher C Chang et al.   GigaScience

Reconstructing the colonization history of lost wolf lineages by the analysis of the mitochondrial genome

(2014) Shuichi Matsumura et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Separating endogenous ancient DNA from modern day contamination in a Siberian Neandertal

(2014) Pontus Skoglund et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome flux and stasis in a five millennium transect of European prehistory

(2014) Cristina Gamba et al.   Nature Communications

Genome Sequencing Highlights the Dynamic Early History of Dogs

(2014) Adam H. Freedman et al.   PLoS Genetics

Derived variants at six genes explain nearly half of size reduction in dog breeds

(2013) M. Rimbault et al.   GENOME RESEARCH

Genome-wide signatures of population bottlenecks and diversifying selection in European wolves

(2013) M Pilot et al.   HEREDITY

Mitochondrial genome of the Tibetan wolf

(2013) Chao Meng et al.   Mitochondrial DNA

Complete mitochondrial genome ofCanis lupus campestris

(2013) Honghai Zhang et al.   Mitochondrial DNA

Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse

(2013) Ludovic Orlando et al.   NATURE

Single-stranded DNA library preparation for the sequencing of ancient or damaged DNA

(2013) Marie-Theres Gansauge et al.   Nature Protocols

Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments

(2013) J. Dabney et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Complete Mitochondrial Genomes of Ancient Canids Suggest a European Origin of Domestic Dogs

(2013) O. Thalmann et al.   SCIENCE

Ancient Admixture in Human History

(2012) N. Patterson et al.   GENETICS

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

A genome-wide perspective on the evolutionary history of enigmatic wolf-like canids

(2011) Bridgett M. vonHoldt et al.   GENOME RESEARCH

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Genome-wide SNP and haplotype analyses reveal a rich history underlying dog domestication

(2010) Bridgett M. vonHoldt et al.   NATURE

Influence of Bering Strait flow and North Atlantic circulation on glacial sea-level changes

(2010) Aixue Hu et al.   Nature Geoscience

A Simple Genetic Architecture Underlies Morphological Variation in Dogs

(2010) Adam R. Boyko et al.   PLOS BIOLOGY

Next Generation Sequencing of Ancient DNA: Requirements, Strategies and Perspectives

(2010) Michael Knapp et al.   Genes

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

mtDNA Data Indicate a Single Origin for Dogs South of Yangtze River, Less Than 16,300 Years Ago, from Numerous Wolves

(2009) J.-F. Pang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Molecular and Evolutionary History of Melanism in North American Gray Wolves

(2009) T. M. Anderson et al.   SCIENCE

Fossil dogs and wolves from Palaeolithic sites in Belgium, the Ukraine and Russia: osteometry, ancient DNA and stable isotopes

(2008) Mietje Germonpré et al.   JOURNAL OF ARCHAEOLOGICAL SCIENCE