标题
Aquaculture omics: An update on the current status of research and data analysis
作者
关键词
-
出版物
Marine Genomics
Volume 64, Issue -, Pages 100967
出版商
Elsevier BV
发表日期
2022-06-29
DOI
10.1016/j.margen.2022.100967
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- RNA-Seq Transcriptome Analysis of the Liver and Brain of the Black Carp (Mylopharyngodon piceus) During Fasting
- (2021) Ya-Fan Dai et al. MARINE BIOTECHNOLOGY
- De novo Assembly and Genome-Wide SNP Discovery in Rohu Carp, Labeo rohita
- (2020) Paramananda Das et al. Frontiers in Genetics
- The genome of walking catfish Clarias magur (Hamilton, 1822) unveils the genetic basis that may have facilitated the development of environmental and terrestrial adaptation systems in air-breathing catfishes
- (2020) Basdeo Kushwaha et al. DNA RESEARCH
- Transcriptome-wide changes associated with the reproductive behaviour of male guppies exposed to 17α-ethinyl estradiol
- (2020) Minna Saaristo et al. ENVIRONMENTAL POLLUTION
- Transcriptome Profile Analysis on Ovarian Tissues of Autotetraploid Fish and Diploid Red Crucian Carp
- (2019) Yude Wang et al. Frontiers in Genetics
- Transcriptome Analysis of Male and Female Mature Gonads of Silver Sillago (Sillago sihama)
- (2019) Changxu Tian et al. Genes
- Constructing a High-Density Genetic Linkage Map for Large Yellow Croaker (Larimichthys crocea) and Mapping Resistance Trait Against Ciliate Parasite Cryptocaryon irritans
- (2019) Shengnan Kong et al. MARINE BIOTECHNOLOGY
- Complete genome sequence and pathogenic analysis of a new betanodavirus isolated from shellfish
- (2019) Young Chul Kim et al. JOURNAL OF FISH DISEASES
- Revealing liver specific microRNAs linked with carbohydrate metabolism of farmed carp, Labeo rohita (Hamilton, 1822)
- (2019) Kiran D. Rasal et al. GENOMICS
- Liver-Specific microRNA Identification in Farmed Carp, Labeo bata (Hamilton, 1822), Fed with Starch Diet Using High-Throughput Sequencing
- (2019) Kiran D. Rasal et al. MARINE BIOTECHNOLOGY
- Genomic and Metagenomic Insights Into the Microbial Community in the Regenerating Intestine of the Sea Cucumber Apostichopus japonicus
- (2019) Hongxia Zhang et al. Frontiers in Microbiology
- Inventory of European Sea Bass (Dicentrarchus labrax) sncRNAs Vital During Early Teleost Development
- (2019) Elena Sarropoulou et al. Frontiers in Genetics
- De novo assembly of the goldfish (Carassius auratus) genome and the evolution of genes after whole-genome duplication
- (2019) Zelin Chen et al. Science Advances
- Species-Specific Marker Discovery in Tilapia
- (2019) Mochamad Syaifudin et al. Scientific Reports
- Metagenomics Reveals Seasonal Functional Adaptation of the Gut Microbiome to Host Feeding and Fasting in the Chinese Alligator
- (2019) Ke-Yi Tang et al. Frontiers in Microbiology
- Regulatory Pathways Controlling Female Insect Reproduction
- (2018) Sourav Roy et al. Annual Review of Entomology
- RNA-Seq analysis of transcriptome responses in Atlantic cod ( Gadus morhua ) precision-cut liver slices exposed to benzo[ a ]pyrene and 17α-ethynylestradiol
- (2018) Fekadu Yadetie et al. AQUATIC TOXICOLOGY
- A comparative genomics study of carbohydrate/glucose metabolic genes: from fish to mammals
- (2018) Yuru Zhang et al. BMC GENOMICS
- Transcriptome Analysis Based on RNA-Seq in Understanding Pathogenic Mechanisms of Diseases and the Immune System of Fish: A Comprehensive Review
- (2018) Arun Sudhagar et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Length-weight relationships for three fishes in the Mali Hka River and Nmai Hka River, Myanmar
- (2018) Hai-Tao Zheng et al. JOURNAL OF APPLIED ICHTHYOLOGY
- Metagenomic sequencing of environmental DNA reveals marine faunal assemblages from the West Antarctic Peninsula
- (2018) Dominique A. Cowart et al. Marine Genomics
- Dietary soybean meal affects intestinal homoeostasis by altering the microbiota, morphology and inflammatory cytokine gene expression in northern snakehead
- (2018) Shuyan Miao et al. Scientific Reports
- Application of omics technologies for a deeper insight into quali-quantitative production traits in broiler chickens: A review
- (2018) Marco Zampiga et al. Journal of Animal Science and Biotechnology
- MicroRNA Alternations in the Testes Related to the Sterility of Triploid Fish
- (2018) Min Tao et al. MARINE BIOTECHNOLOGY
- Detailed insights into pan-European population structure and inbreeding in wild and hatchery Pacific oysters (Crassostrea gigas ) revealed by genome-wide SNP data
- (2018) David L. J. Vendrami et al. Evolutionary Applications
- Gonadal transcriptome analysis of the common carp, Cyprinus carpio: Identification of differentially expressed genes and SSRs
- (2018) Arumugam Anitha et al. GENERAL AND COMPARATIVE ENDOCRINOLOGY
- Comparative study of gut microbiota in wild and captive Malaysian Mahseer (Tor tambroides )
- (2018) Chun K. Tan et al. MicrobiologyOpen
- Transcriptomic analysis of immunity in rainbow trout (Oncorhynchus mykiss) gills infected by Ichthyophthirius multifiliis
- (2018) Khairul Syahputra et al. FISH & SHELLFISH IMMUNOLOGY
- Applications of next-generation sequencing in fisheries research: A review
- (2017) Girish Kumar et al. FISHERIES RESEARCH
- Temporal variation in brain transcriptome is associated with the expression of female mimicry as a sequential male alternative reproductive tactic in fish
- (2017) Sara D. Cardoso et al. MOLECULAR ECOLOGY
- Assessment of Common and Emerging Bioinformatics Pipelines for Targeted Metagenomics
- (2017) Léa Siegwald et al. PLoS One
- The skin microbiome of the common thresher shark (Alopias vulpinus ) has low taxonomic and gene function β-diversity
- (2017) Michael P. Doane et al. Environmental Microbiology Reports
- Discovery and characterization of single nucleotide polymorphisms in two anadromous alosine fishes of conservation concern
- (2017) Diana S. Baetscher et al. Ecology and Evolution
- Enhancing the Resolution of Rumen Microbial Classification from Metatranscriptomic Data Using Kraken and Mothur
- (2017) Andre L. A. Neves et al. Frontiers in Microbiology
- Parasitism perturbs the mucosal microbiome of Atlantic Salmon
- (2017) M. S. Llewellyn et al. Scientific Reports
- Supplementation of formulated diets for tilapia (Oreochromis niloticus) with selected exogenous enzymes: Overall performance and effects on intestinal histology and microbiota
- (2016) A.A. Adeoye et al. ANIMAL FEED SCIENCE AND TECHNOLOGY
- Transcriptome profiling in fast versus slow-growing rainbow trout across seasonal gradients
- (2016) Roy G. Danzmann et al. BMC GENOMICS
- Characterization of an extensive rainbow trout miRNA transcriptome by next generation sequencing
- (2016) Amelie Juanchich et al. BMC GENOMICS
- Whole genome sequencing of turbot (Scophthalmus maximus; Pleuronectiformes): a fish adapted to demersal life
- (2016) Antonio Figueras et al. DNA RESEARCH
- Atlantic Salmon (Salmo salar L.) Gastrointestinal Microbial Community Dynamics in Relation to Digesta Properties and Diet
- (2016) Kamarul Zaman Zarkasi et al. MICROBIAL ECOLOGY
- IMG/M: integrated genome and metagenome comparative data analysis system
- (2016) I-Min A. Chen et al. NUCLEIC ACIDS RESEARCH
- Fish intake during pregnancy or infancy and allergic outcomes in children: A systematic review and meta-analysis
- (2016) Guo-Qiang Zhang et al. PEDIATRIC ALLERGY AND IMMUNOLOGY
- Next generation sequencing technology and genomewide data analysis: Perspectives for retinal research
- (2016) Vijender Chaitankar et al. PROGRESS IN RETINAL AND EYE RESEARCH
- Hypoxia causes transgenerational impairments in reproduction of fish
- (2016) Simon Yuan Wang et al. Nature Communications
- SNP discovery from liver transcriptome in the fish Piaractus mesopotamicus
- (2016) Vito Antonio Mastrochirico-Filho et al. Conservation Genetics Resources
- Identification of Deleterious Mutations inMyostatinGene of Rohu Carp (Labeo rohita) Using Modeling and Molecular Dynamic Simulation Approaches
- (2016) Kiran Dashrath Rasal et al. Biomed Research International
- Fish-T1K (Transcriptomes of 1,000 Fishes) Project: large-scale transcriptome data for fish evolution studies
- (2016) Ying Sun et al. GigaScience
- Liver Transcriptome Analysis of the Large Yellow Croaker (Larimichthys crocea) during Fasting by Using RNA-Seq
- (2016) Baoying Qian et al. PLoS One
- Transcriptome Analysis of the Innate Immunity-Related Complement System in Spleen Tissue of Ctenopharyngodon idella Infected with Aeromonas hydrophila
- (2016) Yunfei Dang et al. PLoS One
- Co-cultivation and transcriptome sequencing of two co-existing fish pathogens Moritella viscosa and Aliivibrio wodanis
- (2015) Erik Hjerde et al. BMC GENOMICS
- Temperature during early development has long-term effects on microRNA expression in Atlantic cod
- (2015) Teshome Tilahun Bizuayehu et al. BMC GENOMICS
- Identification of microRNA biomarkers in type 2 diabetes: a meta-analysis of controlled profiling studies
- (2015) Hongmei Zhu et al. DIABETOLOGIA
- Assessment of immunotoxicity of dibutyl phthalate using live zebrafish embryos
- (2015) Hai Xu et al. FISH & SHELLFISH IMMUNOLOGY
- A comparative study on microbiota from the intestine of Prussian carp (Carassius gibelio) and their aquatic environmental compartments, using different molecular methods
- (2015) E.N. Kashinskaya et al. JOURNAL OF APPLIED MICROBIOLOGY
- RNA Sequencing to Study Gene Expression and SNP Variations Associated with Growth in Zebrafish Fed a Plant Protein-Based Diet
- (2015) Pilar E. Ulloa et al. MARINE BIOTECHNOLOGY
- Jin et al. reply
- (2015) F.-F. Jin et al. NATURE
- The draft genome of the grass carp (Ctenopharyngodon idellus) provides insights into its evolution and vegetarian adaptation
- (2015) Yaping Wang et al. NATURE GENETICS
- Influence of Development and Dietary Phospholipid Content and Composition on Intestinal Transcriptome of Atlantic Salmon (Salmo salar)
- (2015) Christian De Santis et al. PLoS One
- The outer mucus layer hosts a distinct intestinal microbial niche
- (2015) Hai Li et al. Nature Communications
- Construction, De-Novo Assembly and Analysis of Transcriptome for Identification of Reproduction-Related Genes and Pathways from Rohu, Labeo rohita (Hamilton)
- (2015) Dinesh Kumar Sahu et al. PLoS One
- Sequencing and characterization of the transcriptome of half-smooth tongue sole (Cynoglossus semilaevis)
- (2014) Wenji Wang et al. BMC GENOMICS
- Thermal plasticity of the miRNA transcriptome during Senegalese sole development
- (2014) Catarina Campos et al. BMC GENOMICS
- Mutations of 60 known causative genes in 157 families with retinitis pigmentosa based on exome sequencing
- (2014) Yan Xu et al. HUMAN GENETICS
- Characterization of the gut microbiota of three commercially valuable warmwater fish species
- (2014) A.M. Larsen et al. JOURNAL OF APPLIED MICROBIOLOGY
- Transcriptome Analysis of Psoriasis in a Large Case–Control Sample: RNA-Seq Provides Insights into Disease Mechanisms
- (2014) Bingshan Li et al. JOURNAL OF INVESTIGATIVE DERMATOLOGY
- Elephant shark genome provides unique insights into gnathostome evolution
- (2014) Byrappa Venkatesh et al. NATURE
- The genomic substrate for adaptive radiation in African cichlid fish
- (2014) David Brawand et al. NATURE
- Genome sequence and genetic diversity of the common carp, Cyprinus carpio
- (2014) Peng Xu et al. NATURE GENETICS
- Whole-genome sequence of a flatfish provides insights into ZW sex chromosome evolution and adaptation to a benthic lifestyle
- (2014) Songlin Chen et al. NATURE GENETICS
- RNA-Seq Technology and Its Application in Fish Transcriptomics
- (2014) Xi Qian et al. OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY
- Clear as mud: A meta-analysis on the effects of sedimentation on freshwater fish and the effectiveness of sediment-control measures
- (2014) Jacqueline M. Chapman et al. WATER RESEARCH
- Regulation of microRNA expression in the neuronal stem cell niches during aging of the short-lived annual fish Nothobranchius furzeri
- (2014) Eva Terzibasi Tozzini et al. Frontiers in Cellular Neuroscience
- The draft genome of the large yellow croaker reveals well-developed innate immunity
- (2014) Changwen Wu et al. Nature Communications
- The cavefish genome reveals candidate genes for eye loss
- (2014) Suzanne E. McGaugh et al. Nature Communications
- European sea bass genome and its variation provide insights into adaptation to euryhalinity and speciation
- (2014) Mbaye Tine et al. Nature Communications
- The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates
- (2014) Camille Berthelot et al. Nature Communications
- Systemic Approach to Identify Serum microRNAs as Potential Biomarkers for Acute Myocardial Infarction
- (2014) An Hsu et al. Biomed Research International
- Dietary differences are reflected on the gut prokaryotic community structure of wild and commercially reared sea bream (Sparus aurata)
- (2014) Konstantinos A. Kormas et al. MicrobiologyOpen
- Plasticity of gene expression according to salinity in the testis of broodstock and F1 black-chinned tilapia,Sarotherodon melanotheron heudelotii
- (2014) Jean-Christophe Avarre et al. PeerJ
- Aquacultured Rainbow Trout (Oncorhynchus mykiss) Possess a Large Core Intestinal Microbiota That Is Resistant to Variation in Diet and Rearing Density
- (2013) S. Wong et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Characterization of differential transcript abundance through time during Nematostella vectensis development
- (2013) Rebecca Helm et al. BMC GENOMICS
- Factors influencing the grass carp gut microbiome and its effect on metabolism
- (2013) Jiajia Ni et al. FEMS MICROBIOLOGY ECOLOGY
- Fish gut microbiota analysis differentiates physiology and behavior of invasive Asian carp and indigenous American fish
- (2013) Lin Ye et al. ISME Journal
- The African coelacanth genome provides insights into tetrapod evolution
- (2013) Chris T. Amemiya et al. NATURE
- The zebrafish reference genome sequence and its relationship to the human genome
- (2013) Kerstin Howe et al. NATURE
- The genome of the platyfish, Xiphophorus maculatus, provides insights into evolutionary adaptation and several complex traits
- (2013) Manfred Schartl et al. NATURE GENETICS
- Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution
- (2013) Jeramiah J Smith et al. NATURE GENETICS
- EBI metagenomics—a new resource for the analysis and archiving of metagenomic data
- (2013) Sarah Hunter et al. NUCLEIC ACIDS RESEARCH
- Deep RNA Sequencing of the Skeletal Muscle Transcriptome in Swimming Fish
- (2013) Arjan P. Palstra et al. PLoS One
- Gut Microbiota Contributes to the Growth of Fast-Growing Transgenic Common Carp (Cyprinus carpio L.)
- (2013) Xuemei Li et al. PLoS One
- SNP Discovery in European Anchovy (Engraulis encrasicolus, L) by High-Throughput Transcriptome and Genome Sequencing
- (2013) Iratxe Montes et al. PLoS One
- De novo Assembly of the Indo-Pacific Humpback Dolphin Leucocyte Transcriptome to Identify Putative Genes Involved in the Aquatic Adaptation and Immune Response
- (2013) Duan Gui et al. PLoS One
- Hepatic transcriptome profiling indicates differential mRNA expression of apoptosis and immune related genes in eelpout (Zoarces viviparus) caught at Göteborg harbor, Sweden
- (2012) Noomi Asker et al. AQUATIC TOXICOLOGY
- Microbiota Regulate Intestinal Absorption and Metabolism of Fatty Acids in the Zebrafish
- (2012) Ivana Semova et al. Cell Host & Microbe
- Incorporating RNA-seq data into the zebrafish Ensembl genebuild
- (2012) J. E. Collins et al. GENOME RESEARCH
- Differential expression patterns of growth-related microRNAs in the skeletal muscle of Nile tilapia (Oreochromis niloticus)1
- (2012) C. W. Huang et al. JOURNAL OF ANIMAL SCIENCE
- Expressed Sequences and Polymorphisms in Rohu Carp (Labeo rohita, Hamilton) Revealed by mRNA-seq
- (2012) Nicholas Robinson et al. MARINE BIOTECHNOLOGY
- The genomic basis of adaptive evolution in threespine sticklebacks
- (2012) Felicity C. Jones et al. NATURE
- Targeted SNP discovery in Atlantic salmon (Salmo salar) genes using a 3'UTR-primed SNP detection approach
- (2011) Rune Andreassen et al. BMC GENOMICS
- Generation of a reference transcriptome for evaluating rainbow trout responses to various stressors
- (2011) Cecilia C Sánchez et al. BMC GENOMICS
- Effects of the total replacement of fish-based diet with plant-based diet on the hepatic transcriptome of two European sea bass (Dicentrarchus labrax) half-sibfamilies showing different growth rates with the plant-based diet
- (2011) Florian Geay et al. BMC GENOMICS
- Conserved Function of lincRNAs in Vertebrate Embryonic Development despite Rapid Sequence Evolution
- (2011) Igor Ulitsky et al. CELL
- Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis
- (2011) A. Pauli et al. GENOME RESEARCH
- The genome sequence of Atlantic cod reveals a unique immune system
- (2011) Bastiaan Star et al. NATURE
- Gene Discovery and Tissue-Specific Transcriptome Analysis in Chickpea with Massively Parallel Pyrosequencing and Web Resource Development
- (2011) R. Garg et al. PLANT PHYSIOLOGY
- Metagenomic Analyses: Past and Future Trends
- (2010) Carola Simon et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Mining transcriptome sequences towards identifying adaptive single nucleotide polymorphisms in lake whitefish species pairs (Coregonusspp. Salmonidae)
- (2010) SÉBASTIEN RENAUT et al. MOLECULAR ECOLOGY
- Single nucleotide polymorphism discovery in rainbow trout by deep sequencing of a reduced representation library
- (2009) Cecilia Sánchez et al. BMC GENOMICS
- Transcriptome Profiling and Functional Analyses of the Zebrafish Embryonic Innate Immune Response to Salmonella Infection
- (2009) O. W. Stockhammer et al. JOURNAL OF IMMUNOLOGY
- A MicroRNA Repertoire for Functional Genome Research in Rainbow Trout (Oncorhynchus mykiss)
- (2009) Mohamed Salem et al. MARINE BIOTECHNOLOGY
- Identification and characterisation of novel SNP markers in Atlantic cod: Evidence for directional selection
- (2008) Thomas Moen et al. BMC GENETICS
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