Genomic and Metagenomic Insights Into the Microbial Community in the Regenerating Intestine of the Sea Cucumber Apostichopus japonicus

Characterization of the bacterial community in different parts of the gut of sea cucumber (Apostichopus Japonicus ) and its variation during gut regeneration

(2018) Luo Wang et al.   AQUACULTURE RESEARCH

Effects of dietary supplementation of four strains of lactic acid bacteria on growth, immune-related response and genes expression of the juvenile sea cucumber Apostichopus japonicus Selenka

(2018) Chao Li et al.   FISH & SHELLFISH IMMUNOLOGY

Keystone taxa as drivers of microbiome structure and functioning

(2018) Samiran Banerjee et al.   NATURE REVIEWS MICROBIOLOGY

Effects of a Potential Autochthonous Probiotic Bacillus subtilis 2-1 on the Growth and Intestinal Microbiota of Juvenile Sea Cucumber, Apostichopus japonicus Selenka

(2018) Yancui Zhao et al.   Journal of Ocean University of China

Comparative Phospho- and Acetyl Proteomics Analysis of Posttranslational Modifications Regulating Intestine Regeneration in Sea Cucumbers

(2018) Lina Sun et al.   Frontiers in Physiology

Synbiotic dietary supplement affects growth, immune responses and intestinal microbiota of Apostichopus japonicus

(2017) Xitao Wang et al.   FISH & SHELLFISH IMMUNOLOGY

The sea cucumber genome provides insights into morphological evolution and visceral regeneration

(2017) Xiaojun Zhang et al.   PLOS BIOLOGY

The Central Nervous System and the Gut Microbiome

(2016) Gil Sharon et al.   CELL

Gut bacterial diversity of farmed sea cucumbers Apostichopus japonicus with different growth rates

(2016) Yujie Sha et al.   MICROBIOLOGY

Individual Apostichopus japonicus fecal microbiome reveals a link with polyhydroxybutyrate producers in host growth gaps

(2016) Yohei Yamazaki et al.   Scientific Reports

Changes in the Structure of the Microbial Community Associated with Nannochloropsis salina following Treatments with Antibiotics and Bioactive Compounds

(2016) Haifeng Geng et al.   Frontiers in Microbiology

Intestinal microbiota and immune related genes in sea cucumber (Apostichopus japonicus) response to dietary β-glucan supplementation

(2015) Gang Yang et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Tenacibaculum holothuriorum sp. nov., isolated from the sea cucumber Apostichopus japonicus intestine

(2015) Liping Wang et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Recovering glycoside hydrolase genes from active tundra cellulolytic bacteria

(2014) Lee J. Pinnell et al.   CANADIAN JOURNAL OF MICROBIOLOGY

Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes

(2014) H Bjørn Nielsen et al.   NATURE BIOTECHNOLOGY

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Bacterial Community Composition in the Gut Content and Ambient Sediment of Sea Cucumber Apostichopus japonicus Revealed by 16S rRNA Gene Pyrosequencing

(2014) Fei Gao et al.   PLoS One

Bacterial diversity of gut content in sea cucumber (Apostichopus japonicus) and its habitat surface sediment

(2014) Fei Gao et al.   Journal of Ocean University of China

Physiological characterization of aerobic culturable bacteria in the intestine of the sea cucumber Apostichopus japonicus

(2013) Xiaochi Zhang et al.   JOURNAL OF GENERAL AND APPLIED MICROBIOLOGY

eggNOG v4.0: nested orthology inference across 3686 organisms

(2013) Sean Powell et al.   NUCLEIC ACIDS RESEARCH

RNA-Seq Reveals Dynamic Changes of Gene Expression in Key Stages of Intestine Regeneration in the Sea Cucumber Apostichopus japonicas

(2013) Lina Sun et al.   PLoS One

Effects of dietary live yeast Hanseniaspora opuntiae C21 on the immune and disease resistance against Vibrio splendidus infection in juvenile sea cucumber Apostichopus japonicus

(2012) Yuexin Ma et al.   FISH & SHELLFISH IMMUNOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

Large scale gene expression profiling during intestine and body wall regeneration in the sea cucumber Apostichopus japonicus

(2011) Lina Sun et al.   Comparative Biochemistry and Physiology D-Genomics & Proteomics

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Epithelial cell proliferation in the developing zebrafish intestine is regulated by the Wnt pathway and microbial signaling via Myd88

(2010) S. E. Cheesman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Succession of microbial consortia in the developing infant gut microbiome

(2010) J. E. Koenig et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Post-autotomy regeneration of respiratory trees in the holothurian Apostichopus japonicus (Holothuroidea, Aspidochirotida)

(2009) Igor Y. Dolmatov et al.   CELL AND TISSUE RESEARCH

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

(2008) B. L. Cantarel et al.   NUCLEIC ACIDS RESEARCH