SAPPHIRE: A stacking-based ensemble learning framework for accurate prediction of thermophilic proteins

SCMTHP: A New Approach for Identifying and Characterizing of Tumor-Homing Peptides Using Estimated Propensity Scores of Amino Acids

(2022) Phasit Charoenkwan et al.   Pharmaceutics

BERT4Bitter: a bidirectional encoder representations from transformers (BERT)-based model for improving the prediction of bitter peptides

(2021) Phasit Charoenkwan et al.   BIOINFORMATICS

Improved prediction and characterization of anticancer activities of peptides using a novel flexible scoring card method

(2021) Phasit Charoenkwan et al.   Scientific Reports

StackIL6: a stacking ensemble model for improving the prediction of IL-6 inducing peptides

(2021) Phasit Charoenkwan et al.   BRIEFINGS IN BIOINFORMATICS

STALLION: a stacking-based ensemble learning framework for prokaryotic lysine acetylation site prediction

(2021) Shaherin Basith et al.   BRIEFINGS IN BIOINFORMATICS

Comparative analysis of machine learning-based approaches for identifying therapeutic peptides targeting SARS-CoV-2

(2021) Balachandran Manavalan et al.   BRIEFINGS IN BIOINFORMATICS

UMPred-FRL: A New Approach for Accurate Prediction of Umami Peptides Using Feature Representation Learning

(2021) Phasit Charoenkwan et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

StackHCV: a web-based integrative machine-learning framework for large-scale identification of hepatitis C virus NS5B inhibitors

(2021) Aijaz Ahmad Malik et al.   JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN

StackDPPIV: A novel computational approach for accurate prediction of dipeptidyl peptidase IV (DPP-IV) inhibitory peptides

(2021) Phasit Charoenkwan et al.   METHODS

A novel sequence-based predictor for identifying and characterizing thermophilic proteins using estimated propensity scores of dipeptides

(2021) Phasit Charoenkwan et al.   Scientific Reports

A Method for Prediction of Thermophilic Protein Based on Reduced Amino Acids and Mixed Features

(2020) Changli Feng et al.   Frontiers in Bioengineering and Biotechnology

DeepVF: a deep learning-based hybrid framework for identifying virulence factors using the stacking strategy

(2020) Ruopeng Xie et al.   BRIEFINGS IN BIOINFORMATICS

Meta-iPVP: a sequence-based meta-predictor for improving the prediction of phage virion proteins using effective feature representation

(2020) Phasit Charoenkwan et al.   JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN

Deep-Kcr: accurate detection of lysine crotonylation sites using deep learning method

(2020) Hao Lv et al.   BRIEFINGS IN BIOINFORMATICS

iUmami-SCM: A Novel Sequence-Based Predictor for Prediction and Analysis of Umami Peptides Using a Scoring Card Method with Propensity Scores of Dipeptides

(2020) Phasit Charoenkwan et al.   Journal of Chemical Information and Modeling

iDPPIV-SCM: A Sequence-Based Predictor for Identifying and Analyzing Dipeptidyl Peptidase IV (DPP-IV) Inhibitory Peptides Using a Scoring Card Method

(2020) Phasit Charoenkwan et al.   JOURNAL OF PROTEOME RESEARCH

Large-scale comparative review and assessment of computational methods for anti-cancer peptide identification

(2020) Xiao Liang et al.   BRIEFINGS IN BIOINFORMATICS

DeepYY1: a deep learning approach to identify YY1-mediated chromatin loops

(2020) Fu-Ying Dao et al.   BRIEFINGS IN BIOINFORMATICS

i6mA-Pred: Identifying DNA N6-methyladenine sites in the rice genome

(2019) Wei Chen et al.   BIOINFORMATICS

iRNAD: a computational tool for identifying D modification sites in RNA sequence

(2019) Zhao-Chun Xu et al.   BIOINFORMATICS

A comparison and assessment of computational method for identifying recombination hotspots in Saccharomyces cerevisiae

(2019) Hui Yang et al.   BRIEFINGS IN BIOINFORMATICS

iQSP: A Sequence-Based Tool for the Prediction and Analysis of Quorum Sensing Peptides via Chou’s 5-Steps Rule and Informative Physicochemical Properties

(2019) Phasit Charoenkwan et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

iFeature: a Python package and web server for features extraction and selection from protein and peptide sequences

(2018) Zhen Chen et al.   BIOINFORMATICS

Identify origin of replication in Saccharomyces cerevisiae using two-step feature selection technique

(2018) Fu-Ying Dao et al.   BIOINFORMATICS

Identification of thermophilic proteins by incorporating evolutionary and acid dissociation information into Chou's general pseudo amino acid composition

(2016) Guo-Liang Fan et al.   JOURNAL OF THEORETICAL BIOLOGY

Optimal subset selection of primary sequence features using the genetic algorithm for thermophilic proteins identification

(2014) LiQiang Wang et al.   BIOTECHNOLOGY LETTERS

Estimating confidence intervals for information transfer analysis of confusion matrices

(2014) Mahan Azadpour et al.   JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA

Prediction and Analysis of Antibody Amyloidogenesis from Sequences

(2013) Chyn Liaw et al.   PLoS One

A similarity distance of diversity measure for discriminating mesophilic and thermophilic proteins

(2012) Yong-Chun Zuo et al.   AMINO ACIDS

Detecting thermophilic proteins through selecting amino acid and dipeptide composition features

(2011) Songyot Nakariyakul et al.   AMINO ACIDS

Prediction of Thermophilic Protein with Pseudo Amino Acid Composition: An Approach from Combined Feature Selection and Reduction

(2011) De Wang et al.   PROTEIN AND PEPTIDE LETTERS

CD-HIT Suite: a web server for clustering and comparing biological sequences

(2010) Ying Huang et al.   BIOINFORMATICS

Prediction of thermophilic proteins using feature selection technique

(2010) Hao Lin et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Reliable prediction of protein thermostability change upon double mutation from amino acid sequence

(2009) Liang-Tsung Huang et al.   BIOINFORMATICS

Computing protein stabilities from their chain lengths

(2009) K. Ghosh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Exploiting the Link between Protein Rigidity and Thermostability for Data-Driven Protein Engineering

(2008) S. Radestock et al.   ENGINEERING IN LIFE SCIENCES

An expert system to predict protein thermostability using decision tree

(2008) Li-Cheng Wu et al.   EXPERT SYSTEMS WITH APPLICATIONS