Multiomic Analyses Reveal the Effects of Supplementing Phytosterols on the Metabolic Function of the Rumen Microbiota in Perinatal Cows

Implications of Tributyrin on Gut Microbiota Shifts Related to Performances of Weaning Piglets

(2021) Francesco Miragoli et al.   Microorganisms

β-Sitosterol Ameliorates Endometrium Receptivity in PCOS-Like Mice: The Mediation of Gut Microbiota

(2021) Yanyan Yu et al.   Frontiers in Nutrition

Apart From the Diet, the Ruminal Microbiota of Lambs Is Modified in Relation to Their Genetic Potential for Feed Efficiency or Feeding Behavior

(2021) Christel Marie-Etancelin et al.   Frontiers in Microbiology

Accelerated discovery of novel glycoside hydrolases using targeted functional profiling and selective pressure on the rumen microbiome

(2021) André L. A. Neves et al.   Microbiome

Phylogenetic systematics of Butyrivibrio and Pseudobutyrivibrio genomes illustrate vast taxonomic diversity, open genomes and an abundance of carbohydrate-active enzyme family isoforms

(2021) Sara E. Pidcock et al.   Microbial Genomics

Review: Fifty years of research on rumen methanogenesis: lessons learned and future challenges for mitigation

(2020) K. A. Beauchemin et al.   Animal

β-Sitosterol Attenuates High Grain Diet-Induced Inflammatory Stress and Modifies Rumen Fermentation and Microbiota in Sheep

(2020) Guangliang Xia et al.   Animals

Identification of Complex Rumen Microbiome Interaction Within Diverse Functional Niches as Mechanisms Affecting the Variation of Methane Emissions in Bovine

(2020) Marina Martínez-Álvaro et al.   Frontiers in Microbiology

Multi-omics reveals that the rumen microbiome and its metabolome together with the host metabolome contribute to individualized dairy cow performance

(2020) Ming-Yuan Xue et al.   Microbiome

Comparative metagenomic and metatranscriptomic analyses reveal the breed effect on the rumen microbiome and its associations with feed efficiency in beef cattle

(2019) Fuyong Li et al.   Microbiome

A heritable subset of the core rumen microbiome dictates dairy cow productivity and emissions

(2019) R. John Wallace et al.   Science Advances

Inhibiting Methanogenesis in Rumen Batch Cultures Did Not Increase the Recovery of Metabolic Hydrogen in Microbial Amino Acids

(2019) Emilio M. Ungerfeld et al.   Microorganisms

The bacterial and archaeal community structures and methanogenic potential of the cecal microbiota of goats fed with hay and high-grain diets

(2018) Wei Jin et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Plant sterols and human gut microbiota relationship: An in vitro colonic fermentation study

(2018) María Cuevas-Tena et al.   Journal of Functional Foods

Relationship dietary sterols and gut microbiota: A review

(2018) Maria Cuevas-Tena et al.   EUROPEAN JOURNAL OF LIPID SCIENCE AND TECHNOLOGY

Correlation between microbes and colorectal cancer: tumor apoptosis is induced by sitosterols through promoting gut microbiota to produce short-chain fatty acids

(2018) Hang Ma et al.   APOPTOSIS

Indigenously associated methanogens intensified the metabolism in hydrogenosomes of anaerobic fungi with xylose as substrate

(2017) Yuanfei Li et al.   JOURNAL OF BASIC MICROBIOLOGY

Glucose requirements of an activated immune system in lactating Holstein cows

(2017) S.K. Kvidera et al.   JOURNAL OF DAIRY SCIENCE

Amino acid composition of rumen bacteria and protozoa in cattle

(2017) M. Sok et al.   JOURNAL OF DAIRY SCIENCE

From Dietary Fiber to Host Physiology: Short-Chain Fatty Acids as Key Bacterial Metabolites

(2016) Ara Koh et al.   CELL

Effect of the Associated Methanogen Methanobrevibacter thaueri on the Dynamic Profile of End and Intermediate Metabolites of Anaerobic Fungus Piromyces sp. F1

(2016) Yuanfei Li et al.   CURRENT MICROBIOLOGY

Prebiotics and Bioactive Milk Fractions Affect Gut Development, Microbiota, and Neurotransmitter Expression in Piglets

(2016) Kirsten Berding et al.   JOURNAL OF PEDIATRIC GASTROENTEROLOGY AND NUTRITION

Metabolic profiles of cow's blood; a review

(2016) Kamila Puppel et al.   JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE

Metabolomics of Four Biofluids from Dairy Cows: Potential Biomarkers for Milk Production and Quality

(2015) Hui-Zeng Sun et al.   JOURNAL OF PROTEOME RESEARCH

Electron transport phosphorylation in rumen butyrivibrios: unprecedented ATP yield for glucose fermentation to butyrate

(2015) Timothy J. Hackmann et al.   Frontiers in Microbiology

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Effect of phytosterols on rumen fermentation in vitro

(2014) Y.M. Xi et al.   GENETICS AND MOLECULAR RESEARCH

An improved dual-indexing approach for multiplexed 16S rRNA gene sequencing on the Illumina MiSeq platform

(2014) Douglas W Fadrosh et al.   Microbiome

Plant sterols and plant stanols in the management of dyslipidaemia and prevention of cardiovascular disease

(2013) Helena Gylling et al.   ATHEROSCLEROSIS

IDBA-tran: a more robust de novo de Bruijn graph assembler for transcriptomes with uneven expression levels

(2013) Yu Peng et al.   BIOINFORMATICS

The carbohydrate-active enzymes database (CAZy) in 2013

(2013) Vincent Lombard et al.   NUCLEIC ACIDS RESEARCH

Correlation between Composition of the Bacterial Community and Concentration of Volatile Fatty Acids in the Rumen during the Transition Period and Ketosis in Dairy Cows

(2012) Xiaoxu Wang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Procedures for large-scale metabolic profiling of serum and plasma using gas chromatography and liquid chromatography coupled to mass spectrometry

(2011) Warwick B Dunn et al.   Nature Protocols

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Nitrate and sulfate: Effective alternative hydrogen sinks for mitigation of ruminal methane production in sheep

(2010) S.M. van Zijderveld et al.   JOURNAL OF DAIRY SCIENCE

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Ab initio gene identification in metagenomic sequences

(2010) Wenhan Zhu et al.   NUCLEIC ACIDS RESEARCH

FiehnLib: Mass Spectral and Retention Index Libraries for Metabolomics Based on Quadrupole and Time-of-Flight Gas Chromatography/Mass Spectrometry

(2009) Tobias Kind et al.   ANALYTICAL CHEMISTRY

Modelling the implications of feeding strategy on rumen fermentation and functioning of the rumen wall

(2007) A. Bannink et al.   ANIMAL FEED SCIENCE AND TECHNOLOGY