Comparative metagenomic and metatranscriptomic analyses reveal the breed effect on the rumen microbiome and its associations with feed efficiency in beef cattle

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Assembly of 913 microbial genomes from metagenomic sequencing of the cow rumen

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Specific microbiome-dependent mechanisms underlie the energy harvest efficiency of ruminants

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Bovine Host Genetic Variation Influences Rumen Microbial Methane Production with Best Selection Criterion for Low Methane Emitting and Efficiently Feed Converting Hosts Based on Metagenomic Gene Abundance

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The Features of Fecal and Ileal Mucosa-Associated Microbiota in Dairy Calves during Early Infection with Mycobacterium avium Subspecies paratuberculosis

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Rumen metagenome and metatranscriptome analyses of low methane yield sheep reveals a Sharpea-enriched microbiome characterised by lactic acid formation and utilisation

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Ruminal Bacterial Community Composition in Dairy Cows Is Dynamic over the Course of Two Lactations and Correlates with Feed Efficiency

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The rumen microbial metagenome associated with high methane production in cattle

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Microbiome-metabolome analysis reveals unhealthy alterations in the composition and metabolism of ruminal microbiota with increasing dietary grain in a goat model

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eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences

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Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range

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Rumen Microbiome from Steers Differing in Feed Efficiency

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Characterization of the rumen microbiome of Indian Kankrej cattle (Bos indicus) adapted to different forage diet

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Comparison of library preparation methods reveals their impact on interpretation of metatranscriptomic data

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Human Genetics Shape the Gut Microbiome

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Methane yield phenotypes linked to differential gene expression in the sheep rumen microbiome

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A single genus in the gut microbiome reflects host preference and specificity

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Agriculture: Steps to sustainable livestock

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Fast and sensitive protein alignment using DIAMOND

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Characterization of the Core Rumen Microbiome in Cattle during Transition from Forage to Concentrate as Well as during and after an Acidotic Challenge

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Relating the metatranscriptome and metagenome of the human gut

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Low-methane yield sheep have smaller rumens and shorter rumen retention time

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Diet Alters Both the Structure and Taxonomy of the Ovine Gut Microbial Ecosystem

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Influence of Sire Breed on the Interplay among Rumen Microbial Populations Inhabiting the Rumen Liquid of the Progeny in Beef Cattle

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Methylotrophic methanogenic Thermoplasmata implicated in reduced methane emissions from bovine rumen

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Effect of Phenotypic Residual Feed Intake and Dietary Forage Content on the Rumen Microbial Community of Beef Cattle

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Residual feed intake adjusted for backfat thickness and feeding frequency is independent of fertility in beef heifers

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The Impact of a Consortium of Fermented Milk Strains on the Gut Microbiome of Gnotobiotic Mice and Monozygotic Twins

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Influence of hydrogen on rumen methane formation and fermentation balances through microbial growth kinetics and fermentation thermodynamics

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Correlation of Particular Bacterial PCR-Denaturing Gradient Gel Electrophoresis Patterns with Bovine Ruminal Fermentation Parameters and Feed Efficiency Traits

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Characterization of Variation in Rumen Methanogenic Communities under Different Dietary and Host Feed Efficiency Conditions, as Determined by PCR-Denaturing Gradient Gel Electrophoresis Analysis

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Feed efficiency differences and reranking in beef steers fed grower and finisher diets1

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Dissecting thein VivoMetabolic Potential of Two Human Gut Acetogens

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Validation of two ribosomal RNA removal methods for microbial metatranscriptomics

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Assessment of the Microbial Ecology of Ruminal Methanogens in Cattle with Different Feed Efficiencies

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Effects of dilution rate and retention time of concentrate on efficiency of microbial growth, methane production, and ruminal fermentation in Rusitec fermenters

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Short Communication: Salivary Secretion During Meals in Lactating Dairy Cattle

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