FFPE-Based NGS Approaches into Clinical Practice: The Limits of Glory from a Pathologist Viewpoint
出版年份 2022 全文链接
标题
FFPE-Based NGS Approaches into Clinical Practice: The Limits of Glory from a Pathologist Viewpoint
作者
关键词
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出版物
Journal of Personalized Medicine
Volume 12, Issue 5, Pages 750
出版商
MDPI AG
发表日期
2022-05-06
DOI
10.3390/jpm12050750
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Updated Integrated Analysis of the Efficacy and Safety of Entrectinib in Locally Advanced or Metastatic ROS1 Fusion–Positive Non–Small-Cell Lung Cancer
- (2021) Rafal Dziadziuszko et al. JOURNAL OF CLINICAL ONCOLOGY
- The Role of the Pathologist in the Next-Generation Era of Tumor Molecular Characterization
- (2021) Valentina Angerilli et al. Diagnostics
- Next-generation sequencing technologies: An overview
- (2021) Taishan Hu et al. HUMAN IMMUNOLOGY
- Phase 2 Study of Dabrafenib Plus Trametinib in Patients With BRAF V600E-Mutant Metastatic NSCLC: Updated 5-Year Survival Rates and Genomic Analysis
- (2021) David Planchard et al. Journal of Thoracic Oncology
- Ipatasertib plus abiraterone and prednisolone in metastatic castration-resistant prostate cancer (IPATential150): a multicentre, randomised, double-blind, phase 3 trial
- (2021) Christopher Sweeney et al. LANCET
- Patient-reported outcomes from STARTRK-2: a global phase II basket study of entrectinib for ROS1 fusion-positive non-small-cell lung cancer and NTRK fusion-positive solid tumours
- (2021) L. Paz-Ares et al. ESMO Open
- The storm of NGS in NSCLC diagnostic-therapeutic pathway: How to sun the real clinical practice
- (2021) Giovanna De Maglio et al. CRITICAL REVIEWS IN ONCOLOGY HEMATOLOGY
- Larotrectinib in patients with TRK fusion-positive solid tumours: a pooled analysis of three phase 1/2 clinical trials
- (2020) David S Hong et al. LANCET ONCOLOGY
- Effect of decalcification protocols on immunohistochemistry and molecular analyses of bone samples
- (2020) Elodie Miquelestorena-Standley et al. MODERN PATHOLOGY
- Antitumor activity of crizotinib in lung cancers harboring a MET exon 14 alteration
- (2020) Alexander Drilon et al. NATURE MEDICINE
- Molecular profiling for precision cancer therapies
- (2020) Eoghan R. Malone et al. Genome Medicine
- Ivosidenib in IDH1-mutant, chemotherapy-refractory cholangiocarcinoma (ClarIDHy): a multicentre, randomised, double-blind, placebo-controlled, phase 3 study
- (2020) Ghassan K Abou-Alfa et al. LANCET ONCOLOGY
- Pemigatinib for previously treated, locally advanced or metastatic cholangiocarcinoma: a multicentre, open-label, phase 2 study
- (2020) Ghassan K Abou-Alfa et al. LANCET ONCOLOGY
- Olaparib for Metastatic Castration-Resistant Prostate Cancer
- (2020) Johann de Bono et al. NEW ENGLAND JOURNAL OF MEDICINE
- Changing Technologies of RNA Sequencing and Their Applications in Clinical Oncology
- (2020) Ye Wang et al. Frontiers in Oncology
- Telomere-to-telomere assembly of a complete human X chromosome
- (2020) Karen H. Miga et al. NATURE
- Long-read human genome sequencing and its applications
- (2020) Glennis A. Logsdon et al. NATURE REVIEWS GENETICS
- Computational methods and next-generation sequencing approaches to analyze epigenetics data: Profiling of methods and applications
- (2020) Itika Arora et al. METHODS
- Effects of ex�vivo ischemia time and delayed processing on quality of specimens in tissue biobank
- (2020) Dan Guo et al. Molecular Medicine Reports
- Efficacy of Selpercatinib in RET Fusion–Positive Non–Small-Cell Lung Cancer
- (2020) Alexander Drilon et al. NEW ENGLAND JOURNAL OF MEDICINE
- Impact of DNA integrity on the success rate of tissue‐based next‐generation sequencing: Lessons from nationwide cancer genome screening project SCRUM‐Japan GI‐SCREEN
- (2020) Takeshi Kuwata et al. PATHOLOGY INTERNATIONAL
- Best practices for variant calling in clinical sequencing
- (2020) Daniel C. Koboldt Genome Medicine
- Application of Next Generation Sequencing in Laboratory Medicine
- (2020) Yiming Zhong et al. Annals of Laboratory Medicine
- Fast and Memory Efficient Approach for Mapping NGS Reads to a Reference Genome
- (2019) Sanjeev Kumar et al. Journal of Bioinformatics and Computational Biology
- Crizotinib in ROS1-rearranged advanced non-small-cell lung cancer (NSCLC): updated results, including overall survival, from PROFILE 1001
- (2019) A T Shaw et al. ANNALS OF ONCOLOGY
- Pembrolizumab (pembro) for advanced biliary adenocarcinoma: Results from the KEYNOTE-028 (KN028) and KEYNOTE-158 (KN158) basket studies.
- (2019) Yung-Jue Bang et al. JOURNAL OF CLINICAL ONCOLOGY
- Testing algorithm for identification of patients with TRK fusion cancer
- (2019) Frédérique Penault-Llorca et al. JOURNAL OF CLINICAL PATHOLOGY
- DNA-Based versus RNA-Based Detection of MET Exon 14 Skipping Events in Lung Cancer
- (2019) Kurtis D. Davies et al. Journal of Thoracic Oncology
- Comprehensive validation of liquid-based cytology specimens for next-generation sequencing in cancer genome analysis
- (2019) Toshiaki Akahane et al. PLoS One
- Tumor mutation burden: from comprehensive mutational screening to the clinic
- (2019) Francesca Galuppini et al. Cancer Cell International
- A new era of long-read sequencing for cancer genomics
- (2019) Yoshitaka Sakamoto et al. JOURNAL OF HUMAN GENETICS
- Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome
- (2019) Aaron M. Wenger et al. NATURE BIOTECHNOLOGY
- Encorafenib, Binimetinib, and Cetuximab in BRAF V600E–Mutated Colorectal Cancer
- (2019) Scott Kopetz et al. NEW ENGLAND JOURNAL OF MEDICINE
- Phase II Open-Label Study of Pembrolizumab in Treatment-Refractory, Microsatellite Instability–High/Mismatch Repair–Deficient Metastatic Colorectal Cancer: KEYNOTE-164
- (2019) Dung T. Le et al. JOURNAL OF CLINICAL ONCOLOGY
- Tumor BRCA Test for Patients with Epithelial Ovarian Cancer: The Role of Molecular Pathology in the Era of PARP Inhibitor Therapy
- (2019) Caterina Fumagalli et al. Cancers
- Entrectinib in patients with advanced or metastatic NTRK fusion-positive solid tumours: integrated analysis of three phase 1–2 trials
- (2019) Robert C Doebele et al. LANCET ONCOLOGY
- Molecular Diagnostics in Pathology: Time for a Next-Generation Pathologist?
- (2018) Matteo Fassan ARCHIVES OF PATHOLOGY & LABORATORY MEDICINE
- External Quality Assessment Identifies Training Needs to Determine the Neoplastic Cell Content for Biomarker Testing
- (2018) Kelly Dufraing et al. JOURNAL OF MOLECULAR DIAGNOSTICS
- Standards and Guidelines for Validating Next-Generation Sequencing Bioinformatics Pipelines
- (2018) Somak Roy et al. JOURNAL OF MOLECULAR DIAGNOSTICS
- Comparison of molecular testing modalities for detection of ROS1 rearrangements in a cohort of positive patient samples
- (2018) Kurtis D. Davies et al. Journal of Thoracic Oncology
- Enhancing the accuracy of next-generation sequencing for detecting rare and subclonal mutations
- (2018) Jesse J. Salk et al. NATURE REVIEWS GENETICS
- Formalin fixation increases deamination mutation signature but should not lead to false positive mutations in clinical practice
- (2018) Leah M. Prentice et al. PLoS One
- The Third Revolution in Sequencing Technology
- (2018) Erwin L. van Dijk et al. TRENDS IN GENETICS
- The role of the pathology department in the preanalytical phase of molecular analyses
- (2018) Sergiu Susman et al. Cancer Management and Research
- Use of the Ion PGM and the GeneReader NGS Systems in Daily Routine Practice for Advanced Lung Adenocarcinoma Patients: A Practical Point of View Reporting a Comparative Study and Assessment of 90 Patients
- (2018) Simon Heeke et al. Cancers
- Impact of storage conditions on the quality of nucleic acids in paraffin embedded tissues
- (2018) Daniel Groelz et al. PLoS One
- Maintenance Olaparib in Patients with Newly Diagnosed Advanced Ovarian Cancer
- (2018) Kathleen Moore et al. NEW ENGLAND JOURNAL OF MEDICINE
- Pan-tumor genomic biomarkers for PD-1 checkpoint blockade–based immunotherapy
- (2018) Razvan Cristescu et al. SCIENCE
- Use of the GeneReader NGS System in a clinical pathology laboratory: a comparative study
- (2017) Ulrike Koitzsch et al. JOURNAL OF CLINICAL PATHOLOGY
- Guidelines for Validation of Next-Generation Sequencing–Based Oncology Panels
- (2017) Lawrence J. Jennings et al. JOURNAL OF MOLECULAR DIAGNOSTICS
- Nivolumab in patients with metastatic DNA mismatch repair-deficient or microsatellite instability-high colorectal cancer (CheckMate 142): an open-label, multicentre, phase 2 study
- (2017) Michael J Overman et al. LANCET ONCOLOGY
- Targeting NTRK fusion in non-small cell lung cancer: rationale and clinical evidence
- (2017) Biagio Ricciuti et al. MEDICAL ONCOLOGY
- DNA degrades during storage in formalin-fixed and paraffin-embedded tissue blocks
- (2017) Alice Guyard et al. VIRCHOWS ARCHIV
- Detecting Gene Rearrangements in Patient Populations Through a 2-Step Diagnostic Test Comprised of Rapid IHC Enrichment Followed by Sensitive Next-Generation Sequencing
- (2017) Danielle A. Murphy et al. APPLIED IMMUNOHISTOCHEMISTRY & MOLECULAR MORPHOLOGY
- MET Amplification and Exon 14 Splice Site Mutation Define Unique Molecular Subgroups of Non-Small Cell Lung Carcinoma with Poor Prognosis
- (2016) J. H. Tong et al. CLINICAL CANCER RESEARCH
- A Multiplexed Amplicon Approach for Detecting Gene Fusions by Next-Generation Sequencing
- (2016) Carol Beadling et al. JOURNAL OF MOLECULAR DIAGNOSTICS
- Dual-targeted therapy with trastuzumab and lapatinib in treatment-refractory, KRAS codon 12/13 wild-type, HER2-positive metastatic colorectal cancer (HERACLES): a proof-of-concept, multicentre, open-label, phase 2 trial
- (2016) Andrea Sartore-Bianchi et al. LANCET ONCOLOGY
- Coming of age: ten years of next-generation sequencing technologies
- (2016) Sara Goodwin et al. NATURE REVIEWS GENETICS
- Integration of next-generation sequencing in clinical diagnostic molecular pathology laboratories for analysis of solid tumours; an expert opinion on behalf of IQN Path ASBL
- (2016) Zandra C Deans et al. VIRCHOWS ARCHIV
- Mutations of KRAS/NRAS/BRAF predict cetuximab resistance in metastatic colorectal cancer patients
- (2016) Hung-Chih Hsu et al. Oncotarget
- The Influence of Tissue Ischemia Time on RNA Integrity and Patient-Derived Xenografts (PDX) Engraftment Rate in a Non-Small Cell Lung Cancer (NSCLC) Biobank
- (2016) Francesco Guerrera et al. PLoS One
- Understanding next generation sequencing in oncology: A guide for oncologists
- (2015) Sing Yu Moorcraft et al. CRITICAL REVIEWS IN ONCOLOGY HEMATOLOGY
- Challenges and opportunities of next-generation sequencing: a cytopathologist's perspective
- (2015) E. Vigliar et al. CYTOPATHOLOGY
- PacBio Sequencing and Its Applications
- (2015) Anthony Rhoads et al. GENOMICS PROTEOMICS & BIOINFORMATICS
- Analysis of Pre-Analytic Factors Affecting the Success of Clinical Next-Generation Sequencing of Solid Organ Malignancies
- (2015) Hui Chen et al. Cancers
- Dramatic reduction of sequence artefacts from DNA isolated from formalin-fixed cancer biopsies by treatment with uracil-DNA glycosylase.
- (2015) Hongdo Do et al. Oncotarget
- Lung cancer adrenal gland metastasis: Optimal fine-needle aspirate and touch preparation smear cellularity characteristics for successful theranostic next-generation sequencing
- (2014) Ferga C. Gleeson et al. CANCER CYTOPATHOLOGY
- Sequence Artifacts in DNA from Formalin-Fixed Tissues: Causes and Strategies for Minimization
- (2014) H. Do et al. CLINICAL CHEMISTRY
- EGFR analysis: Current evidence and future directions
- (2014) Claudio Bellevicine et al. DIAGNOSTIC CYTOPATHOLOGY
- False Positives in Multiplex PCR-Based Next-Generation Sequencing Have Unique Signatures
- (2014) Chad M. McCall et al. JOURNAL OF MOLECULAR DIAGNOSTICS
- Cytosine Deamination Is a Major Cause of Baseline Noise in Next-Generation Sequencing
- (2014) Guoli Chen et al. Molecular Diagnosis & Therapy
- Anchored multiplex PCR for targeted next-generation sequencing
- (2014) Zongli Zheng et al. NATURE MEDICINE
- First-Line Crizotinib versus Chemotherapy in ALK-Positive Lung Cancer
- (2014) Benjamin J. Solomon et al. NEW ENGLAND JOURNAL OF MEDICINE
- Next-Generation Sequencing Platforms
- (2013) Elaine R. Mardis Annual Review of Analytical Chemistry
- Next-generation sequencing-based multi-gene mutation profiling of solid tumors using fine needle aspiration samples: promises and challenges for routine clinical diagnostics
- (2013) Rashmi Kanagal-Shamanna et al. MODERN PATHOLOGY
- Crizotinib versus Chemotherapy in Advanced ALK-Positive Lung Cancer
- (2013) Alice T. Shaw et al. NEW ENGLAND JOURNAL OF MEDICINE
- Molecular Typing of Lung Adenocarcinoma on Cytological Samples Using a Multigene Next Generation Sequencing Panel
- (2013) Aldo Scarpa et al. PLoS One
- Transcriptome analysis using next-generation sequencing
- (2012) Kai-Oliver Mutz et al. CURRENT OPINION IN BIOTECHNOLOGY
- Progress in Ion Torrent semiconductor chip based sequencing
- (2012) Barry Merriman et al. ELECTROPHORESIS
- Impact of Collection and Storage of Lung Tumor Tissue on Whole Genome Expression Profiling
- (2012) Maxim B. Freidin et al. JOURNAL OF MOLECULAR DIAGNOSTICS
- Nucleic acids from long-term preserved FFPE tissues are suitable for downstream analyses
- (2012) Natalie Ludyga et al. VIRCHOWS ARCHIV
- Targeted high throughput sequencing in clinical cancer Settings: formaldehyde fixed-paraffin embedded (FFPE) tumor tissues, input amount and tumor heterogeneity
- (2011) Martin Kerick et al. BMC Medical Genomics
- Base-calling for next-generation sequencing platforms
- (2011) C. Ledergerber et al. BRIEFINGS IN BIOINFORMATICS
- An integrated semiconductor device enabling non-optical genome sequencing
- (2011) Jonathan M. Rothberg et al. NATURE
- Effects of Formalin, Methacarn, and FineFIX Fixatives on RNA Preservation
- (2010) Isabella Dotti et al. DIAGNOSTIC MOLECULAR PATHOLOGY
- A window into third-generation sequencing
- (2010) E. E. Schadt et al. HUMAN MOLECULAR GENETICS
- Effects of Processing Delay, Formalin Fixation, and Immunohistochemistry on RNA Recovery From Formalin-fixed Paraffin-embedded Tissue Sections
- (2009) Febe van Maldegem et al. DIAGNOSTIC MOLECULAR PATHOLOGY
- Generation, Biological Consequences and Repair Mechanisms of Cytosine Deamination in DNA
- (2009) Shin-Ichiro YONEKURA et al. JOURNAL OF RADIATION RESEARCH
- Somatic EGFR mutations and efficacy of tyrosine kinase inhibitors in NSCLC
- (2009) Helena Linardou et al. Nature Reviews Clinical Oncology
- ChIP–seq: advantages and challenges of a maturing technology
- (2009) Peter J. Park NATURE REVIEWS GENETICS
- Epigenetics: Definition, Mechanisms and Clinical Perspective
- (2009) Cathérine Dupont et al. SEMINARS IN REPRODUCTIVE MEDICINE
- Histone Modifications and Nuclear Architecture: A Review
- (2008) Eva Bártová et al. JOURNAL OF HISTOCHEMISTRY & CYTOCHEMISTRY
- Single-molecule DNA sequencing technologies for future genomics research
- (2008) Pushpendra K. Gupta TRENDS IN BIOTECHNOLOGY
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