Enterobacteriaceae and Bacteroidaceae provide resistance to travel-associated intestinal colonization by multi-drug resistant Escherichia coli

Commensal Enterobacteriaceae Protect against Salmonella Colonization through Oxygen Competition

(2019) Yael Litvak et al.   Cell Host & Microbe

Endogenous Enterobacteriaceae underlie variation in susceptibility to Salmonella infection

(2019) Eric M. Velazquez et al.   Nature Microbiology

Bacteroides-Derived Sphingolipids Are Critical for Maintaining Intestinal Homeostasis and Symbiosis

(2019) Eric M. Brown et al.   Cell Host & Microbe

Global Geographic Trends in Antimicrobial Resistance: The Role of International Travel

(2019) Isabel Frost et al.   JOURNAL OF TRAVEL MEDICINE

Gut Microbiota and Colonization Resistance against Bacterial Enteric Infection

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The EMBL-EBI search and sequence analysis tools APIs in 2019

(2019) Fábio Madeira et al.   NUCLEIC ACIDS RESEARCH

Dietary l-serine confers a competitive fitness advantage to Enterobacteriaceae in the inflamed gut

(2019) Sho Kitamoto et al.   Nature Microbiology

Composition of the intestinal microbiota in extended-spectrum β-lactamase-producing Enterobacteriaceae carriers and non-carriers in Thailand

(2018) Pipat Piewngam et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

Inhibiting antibiotic-resistant Enterobacteriaceae by microbiota-mediated intracellular acidification

(2018) Matthew T. Sorbara et al.   JOURNAL OF EXPERIMENTAL MEDICINE

eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses

(2018) Jaime Huerta-Cepas et al.   NUCLEIC ACIDS RESEARCH

Import and spread of extended-spectrum β-lactamase-producing Enterobacteriaceae by international travellers (COMBAT study): a prospective, multicentre cohort study

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Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper

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Towards standards for human fecal sample processing in metagenomic studies

(2017) Paul I Costea et al.   NATURE BIOTECHNOLOGY

MOCAT2: a metagenomic assembly, annotation and profiling framework

(2016) Jens Roat Kultima et al.   BIOINFORMATICS

A two-part mixed-effects model for analyzing longitudinal microbiome compositional data

(2016) Eric Z. Chen et al.   BIOINFORMATICS

Microcins mediate competition among Enterobacteriaceae in the inflamed gut

(2016) Martina Sassone-Corsi et al.   NATURE

The role of the gut microbiome in the healthy adult status

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High Rate of Acquisition but Short Duration of Carriage of Multidrug-Resistant Enterobacteriaceae After Travel to the Tropics

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Antimicrobials Increase Travelers' Risk of Colonization by Extended-Spectrum Betalactamase-Producing Enterobacteriaceae

(2015) A. Kantele et al.   CLINICAL INFECTIOUS DISEASES

High Rate of Multidrug-Resistant Gram-Negative Bacilli Carriage and Infection in Hospitalized Returning Travelers: a Cross-Sectional Cohort Study

(2015) Loïc Epelboin et al.   JOURNAL OF TRAVEL MEDICINE

Inexpensive Multiplexed Library Preparation for Megabase-Sized Genomes

(2015) Michael Baym et al.   PLoS One

The Effect of Sampling and Storage on the Fecal Microbiota Composition in Healthy and Diseased Subjects

(2015) Danyta I. Tedjo et al.   PLoS One

High colonization rates of extended-spectrum β-lactamase (ESBL)-producing Escherichia coliin Swiss Travellers to South Asia– a prospective observational multicentre cohort study looking at epidemiology, microbiology and risk factors

(2014) Esther Kuenzli et al.   BMC INFECTIOUS DISEASES

The Carriage Of Multiresistant Bacteria After Travel (COMBAT) prospective cohort study: methodology and design

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Acquisition of carbapenemase-producing Enterobacteriaceae by healthy travellers to India, France, February 2012 to March 2013

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Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes

(2014) H Bjørn Nielsen et al.   NATURE BIOTECHNOLOGY

Arabinoxylans and human health

(2013) M. Mendis et al.   FOOD HYDROCOLLOIDS

Travel-associated faecal colonization with ESBL-producing Enterobacteriaceae: incidence and risk factors

(2013) Åse Östholm-Balkhed et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Streptomycin-Induced Inflammation Enhances Escherichia coli Gut Colonization Through Nitrate Respiration

(2013) A. M. Spees et al.   mBio

Structural features of two heteroxylan polysaccharide fractions from wheat bran with anti-complementary and antioxidant activities

(2012) Zdenka Hromádková et al.   CARBOHYDRATE POLYMERS

Outer Membrane Vesicles of a Human Commensal Mediate Immune Regulation and Disease Protection

(2012) Yue Shen et al.   Cell Host & Microbe

Metagenomic epidemiology: a public health need for the control of antimicrobial resistance

(2012) F. Baquero   CLINICAL MICROBIOLOGY AND INFECTION

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

Bacteroides uniformis CECT 7771 Ameliorates Metabolic and Immunological Dysfunction in Mice with High-Fat-Diet Induced Obesity

(2012) Paola Gauffin Cano et al.   PLoS One

Ab initio gene identification in metagenomic sequences

(2010) Wenhan Zhu et al.   NUCLEIC ACIDS RESEARCH

Inducible Foxp3+ regulatory T-cell development by a commensal bacterium of the intestinal microbiota

(2010) J. L. Round et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Thuricin CD, a posttranslationally modified bacteriocin with a narrow spectrum of activity against Clostridium difficile

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Effect of broad- and narrow-spectrum antimicrobials on Clostridium difficile and microbial diversity in a model of the distal colon

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SOAP: short oligonucleotide alignment program

(2008) R. Li et al.   BIOINFORMATICS