Metagenomic strain detection with SameStr: identification of a persisting core gut microbiota transferable by fecal transplantation
出版年份 2022 全文链接
标题
Metagenomic strain detection with SameStr: identification of a persisting core gut microbiota transferable by fecal transplantation
作者
关键词
-
出版物
Microbiome
Volume 10, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2022-03-25
DOI
10.1186/s40168-022-01251-w
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- inStrain profiles population microdiversity from metagenomic data and sensitively detects shared microbial strains
- (2021) Matthew R. Olm et al. NATURE BIOTECHNOLOGY
- Strain inheritance and neonatal gut microbiota development: A meta-analysis
- (2021) Daniel Podlesny et al. INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY
- Strain engraftment competition and functional augmentation in a multi-donor fecal microbiota transplantation trial for obesity
- (2021) Brooke C. Wilson et al. Microbiome
- Dispersal strategies shape persistence and evolution of human gut bacteria
- (2021) Falk Hildebrand et al. Cell Host & Microbe
- Strainberry: automated strain separation in low-complexity metagenomes using long reads
- (2021) Riccardo Vicedomini et al. Nature Communications
- Precise quantification of bacterial strains after fecal microbiota transplantation delineates long-term engraftment and explains outcomes
- (2021) Varun Aggarwala et al. Nature Microbiology
- Functional and Genomic Variation between Human-Derived Isolates of Lachnospiraceae Reveals Inter- and Intra-Species Diversity
- (2020) Matthew T. Sorbara et al. Cell Host & Microbe
- Cartography of opportunistic pathogens and antibiotic resistance genes in a tertiary hospital environment
- (2020) Kern Rei Chng et al. NATURE MEDICINE
- Diversity within species: interpreting strains in microbiomes
- (2020) Thea Van Rossum et al. NATURE REVIEWS MICROBIOLOGY
- Strain-level epidemiology of microbial communities and the human microbiome
- (2020) Yan Yan et al. Genome Medicine
- Phase-variable capsular polysaccharides and lipoproteins modify bacteriophage susceptibility in Bacteroides thetaiotaomicron
- (2020) Nathan T. Porter et al. Nature Microbiology
- Gut microbiome stability and resilience: elucidating the response to perturbations in order to modulate gut health
- (2020) Marina Fassarella et al. GUT
- The founder hypothesis: A basis for microbiota resistance, diversity in taxa carriage, and colonization resistance against pathogens
- (2019) Yael Litvak et al. PLoS Pathogens
- Microbial abundance, activity and population genomic profiling with mOTUs2
- (2019) Alessio Milanese et al. Nature Communications
- Extensive transmission of microbes along the gastrointestinal tract
- (2019) Thomas SB Schmidt et al. eLife
- Microbial genes and pathways in inflammatory bowel disease
- (2019) Melanie Schirmer et al. NATURE REVIEWS MICROBIOLOGY
- Ruminococcus gnavus, a member of the human gut microbiome associated with Crohn’s disease, produces an inflammatory polysaccharide
- (2019) Matthew T. Henke et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Establishing What Constitutes a Healthy Human Gut Microbiome: State of the Science, Regulatory Considerations, and Future Directions
- (2019) Michael I McBurney et al. JOURNAL OF NUTRITION
- The Prevotella copri Complex Comprises Four Distinct Clades Underrepresented in Westernized Populations
- (2019) Adrian Tett et al. Cell Host & Microbe
- Distinct Polysaccharide Utilization Profiles of Human Intestinal Prevotella copri Isolates
- (2019) Hannah Fehlner-Peach et al. Cell Host & Microbe
- Elucidation of a sialic acid metabolism pathway in mucus-foraging Ruminococcus gnavus unravels mechanisms of bacterial adaptation to the gut
- (2019) Andrew Bell et al. Nature Microbiology
- Gut uropathogen abundance is a risk factor for development of bacteriuria and urinary tract infection
- (2019) Matthew Magruder et al. Nature Communications
- Strain Tracking Reveals the Determinants of Bacterial Engraftment in the Human Gut Following Fecal Microbiota Transplantation
- (2018) Christopher S. Smillie et al. Cell Host & Microbe
- Strain-Level Analysis of Mother-to-Child Bacterial Transmission during the First Few Months of Life
- (2018) Moran Yassour et al. Cell Host & Microbe
- Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome
- (2018) Pamela Ferretti et al. Cell Host & Microbe
- GePMI: A statistical model for personal intestinal microbiome identification
- (2018) Zicheng Wang et al. npj Biofilms and Microbiomes
- Precision identification of diverse bloodstream pathogens in the gut microbiome
- (2018) Fiona B. Tamburini et al. NATURE MEDICINE
- Investigation of a Cluster of Sphingomonas koreensis Infections
- (2018) Ryan C. Johnson et al. NEW ENGLAND JOURNAL OF MEDICINE
- High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
- (2018) Chirag Jain et al. Nature Communications
- Microbial strain-level population structure and genetic diversity from metagenomes
- (2017) Duy Tin Truong et al. GENOME RESEARCH
- Strains, functions and dynamics in the expanded Human Microbiome Project
- (2017) Jason Lloyd-Price et al. NATURE
- Accessible, curated metagenomic data through ExperimentHub
- (2017) Edoardo Pasolli et al. NATURE METHODS
- Erratum for Sze and Schloss, “Looking for a Signal in the Noise: Revisiting Obesity and the Microbiome”
- (2017) Marc A. Sze et al. mBio
- Meta-analysis of gut microbiome studies identifies disease-specific and shared responses
- (2017) Claire Duvallet et al. Nature Communications
- A novel Ruminococcus gnavus clade enriched in inflammatory bowel disease patients
- (2017) Andrew Brantley Hall et al. Genome Medicine
- Studying Vertical Microbiome Transmission from Mothers to Infants by Strain-Level Metagenomic Profiling
- (2017) Francesco Asnicar et al. mSystems
- Durable coexistence of donor and recipient strains after fecal microbiota transplantation
- (2016) Simone S. Li et al. SCIENCE
- The initial state of the human gut microbiome determines its reshaping by antibiotics
- (2015) Frédéric Raymond et al. ISME Journal
- MetaPhlAn2 for enhanced metagenomic taxonomic profiling
- (2015) Duy Tin Truong et al. NATURE METHODS
- Identifying personal microbiomes using metagenomic codes
- (2015) Eric A. Franzosa et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Efficacy of Combined Jejunal and Colonic Fecal Microbiota Transplantation for Recurrent Clostridium difficile Infection
- (2014) Sudhir K. Dutta et al. Clinical Gastroenterology and Hepatology
- Correction: Klotho Suppresses Cardiomyocyte Apoptosis in Mice with Stress-Induced Cardiac Injury via Downregulation of Endoplasmic Reticulum Stress
- (2014) Shuang Song et al. PLoS One
- Bacterial colonization factors control specificity and stability of the gut microbiota
- (2013) S. Melanie Lee et al. NATURE
- Accurate and universal delineation of prokaryotic species
- (2013) Daniel R Mende et al. NATURE METHODS
- Genomic variation landscape of the human gut microbiome
- (2012) Siegfried Schloissnig et al. NATURE
- Metagenomic microbial community profiling using unique clade-specific marker genes
- (2012) Nicola Segata et al. NATURE METHODS
- ART: a next-generation sequencing read simulator
- (2011) Weichun Huang et al. BIOINFORMATICS
- A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
- (2011) H. Li BIOINFORMATICS
- A simple, fast, and accurate method of phylogenomic inference
- (2008) Martin Wu et al. GENOME BIOLOGY
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