Computational bioacoustics with deep learning: a review and roadmap

Automatic classification of mice vocalizations using Machine Learning techniques and Convolutional Neural Networks

(2021) Marika Premoli et al.   PLoS One

Long-term deep learning-facilitated environmental acoustic monitoring in the Capital Region of New York State

(2021) M.M. Morgan et al.   Ecological Informatics

BirdNET: A deep learning solution for avian diversity monitoring

(2021) Stefan Kahl et al.   Ecological Informatics

Acoustic auto-encoders for biodiversity assessment

(2021) Benjamin Rowe et al.   Ecological Informatics

Survey coverage, recording duration and community composition affect observed species richness in passive acoustic surveys

(2021) Connor M. Wood et al.   Methods in Ecology and Evolution

Deep Learning-Based Cattle Vocal Classification Model and Real-Time Livestock Monitoring System with Noise Filtering

(2021) Dae-Hyun Jung et al.   Animals

Deep Learning for Deep Waters: An Expert-in-the-Loop Machine Learning Framework for Marine Sciences

(2021) Igor Ryazanov et al.   Journal of Marine Science and Engineering

Workflow and convolutional neural network for automated identification of animal sounds

(2021) Zachary J. Ruff et al.   ECOLOGICAL INDICATORS

Development of a species identification system of Japanese bats from echolocation calls using convolutional neural networks

(2021) Keigo Kobayashi et al.   Ecological Informatics

Nocturnal flight calling behaviour of thrushes in relation to artificial light at night

(2021) Simon Gillings et al.   IBIS

Separating overlapping bat calls with a bi‐directional long short‐term memory network

(2021) KANGKANG ZHANG et al.   Integrative Zoology

Using context to train time-domain echolocation click detectors

(2021) Marie A. Roch et al.   JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA

Data augmentation for the classification of North Atlantic right whales upcalls

(2021) Bruno Padovese et al.   JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA

Deep embedded clustering of coral reef bioacoustics

(2021) Emma Ozanich et al.   JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA

Detecting, classifying, and counting blue whale calls with Siamese neural networks

(2021) Ming Zhong et al.   JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA

Dynamically localizing multiple speakers based on the time-frequency domain

(2021) Hodaya Hammer et al.   EURASIP Journal on Audio Speech and Music Processing

Analysis of ultrasonic vocalizations from mice using computer vision and machine learning

(2021) Antonio HO Fonseca et al.   eLife

A Convolutional Neural Network for Automated Detection of Humpback Whale Song in a Diverse, Long-Term Passive Acoustic Dataset

(2021) Ann N. Allen et al.   Frontiers in Marine Science

Automated detection of Hainan gibbon calls for passive acoustic monitoring

(2021) Emmanuel Dufourq et al.   Remote Sensing in Ecology and Conservation

Software performance for the automated identification of bird vocalisations: the case of two closely related species

(2021) Jean Marchal et al.   BIOACOUSTICS-THE INTERNATIONAL JOURNAL OF ANIMAL SOUND AND ITS RECORDING

Identification and classification for sheep foraging behavior based on acoustic signal and deep learning

(2021) Kui Wang et al.   COMPUTERS AND ELECTRONICS IN AGRICULTURE

On loss functions and CNNs for improved bioacoustic signal classification

(2021) Jie Xie et al.   Ecological Informatics

Sound Event Detection: A tutorial

(2021) Annamaria Mesaros et al.   IEEE SIGNAL PROCESSING MAGAZINE

Application of Deep Learning to Community-Science-Based Mosquito Monitoring and Detection of Novel Species

(2021) Ali Khalighifar et al.   JOURNAL OF MEDICAL ENTOMOLOGY

A multimodel deep learning algorithm to detect North Atlantic right whale up-calls

(2021) Ali K Ibrahim et al.   JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA

Deep perceptual embeddings for unlabelled animal sound events

(2021) Veronica Morfi et al.   JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA

Robust North Atlantic right whale detection using deep learning models for denoising

(2021) William Vickers et al.   JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA

Transfer learning for denoising the echolocation clicks of finless porpoise (Neophocaena phocaenoides sunameri) using deep convolutional autoencoders

(2021) Wuyi Yang et al.   JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA

A classification and quantification approach to generate features in soundscape ecology using neural networks

(2021) Fábio Felix Dias et al.   NEURAL COMPUTING & APPLICATIONS

The Australian Acoustic Observatory

(2021) Paul Roe et al.   Methods in Ecology and Evolution

Broad‐scale applications of the Raspberry Pi: A review and guide for biologists

(2021) Jolle W. Jolles   Methods in Ecology and Evolution

HumBug – An Acoustic Mosquito Monitoring Tool for use on budget smartphones

(2021) Marianne E. Sinka et al.   Methods in Ecology and Evolution

Comparing recurrent convolutional neural networks for large scale bird species classification

(2021) Gaurav Gupta et al.   Scientific Reports

Bioacoustic classification of avian calls from raw sound waveforms with an open-source deep learning architecture

(2021) Francisco J. Bravo Sanchez et al.   Scientific Reports

Automated audio recording as a means of surveying tinamous (Tinamidae) in the Peruvian Amazon

(2021) Reid B. Rumelt et al.   Ecology and Evolution

How index selection, compression, and recording schedule impact the description of ecological soundscapes

(2021) Becky E. Heath et al.   Ecology and Evolution

Localization of Flying Bats from Multichannel Audio Signals by Estimating Location Map with Convolutional Neural Networks

(2021) Kazuki Fujimori et al.   Journal of Robotics and Mechatronics

Diverse ocean noise classification using deep learning

(2021) B. Mishachandar et al.   APPLIED ACOUSTICS

Automatic construction of accurate bioacoustics workflows under time constraints using a surrogate model

(2021) Alexander Brown et al.   APPLIED SOFT COMPUTING

Dynamic sensor activation and decision-level fusion in wireless acoustic sensor networks for classification of domestic activities

(2021) Gert Dekkers et al.   Information Fusion

Automated classification of Tursiops aduncus whistles based on a depth-wise separable convolutional neural network and data augmentation

(2021) Lei Li et al.   JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA

Soundscapes predict species occurrence in tropical forests

(2021) Sarab S. Sethi et al.   OIKOS

Utilizing DeepSqueak for automatic detection and classification of mammalian vocalizations: a case study on primate vocalizations

(2021) Daniel Romero-Mujalli et al.   Scientific Reports

Acoustic traits of bat-pollinated flowers compared to flowers of other pollination syndromes and their echo-based classification using convolutional neural networks

(2021) Ralph Simon et al.   PLoS Computational Biology

Fast and accurate annotation of acoustic signals with deep neural networks

(2021) Elsa Steinfath et al.   eLife

Automated audiovisual behavior recognition in wild primates

(2021) Max Bain et al.   Science Advances

Applying Artificial Intelligence Methods to Detect and Classify Fish Calls from the Northern Gulf of Mexico

(2021) Emily E. Waddell et al.   Journal of Marine Science and Engineering

Classification of singing insect sounds with convolutional neural network

(2021) Sho Hibino et al.   Acoustical Science and Technology

Deep neural networks for automated detection of marine mammal species

(2020) Yu Shiu et al.   Scientific Reports

Comparing Performances of Five Distinct Automatic Classifiers for Fin Whale Vocalizations in Beamformed Spectrograms of Coherent Hydrophone Array

(2020) Heriberto A. Garcia et al.   Remote Sensing

Seabed and range estimation of impulsive time series using a convolutional neural network

(2020) David F. Van Komen et al.   JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA

Beluga whale acoustic signal classification using deep learning neural network models

(2020) Ming Zhong et al.   JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA

Racial disparities in automated speech recognition

(2020) Allison Koenecke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Review of Deep Learning Based Methods for Acoustic Scene Classification

(2020) Jakob Abeßer   Applied Sciences-Basel

Bioacoustic signal classification in continuous recordings: Syllable-segmentation vs sliding-window

(2020) Jie Xie et al.   EXPERT SYSTEMS WITH APPLICATIONS

Characterizing soundscapes across diverse ecosystems using a universal acoustic feature set

(2020) Sarab S. Sethi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Classifying sex and strain from mouse ultrasonic vocalizations using deep learning

(2020) A. Ivanenko et al.   PLoS Computational Biology

Spectrogram Classification Using Dissimilarity Space

(2020) Loris Nanni et al.   Applied Sciences-Basel

Multispecies bioacoustic classification using transfer learning of deep convolutional neural networks with pseudo-labeling

(2020) Ming Zhong et al.   APPLIED ACOUSTICS

A pipeline for identification of bird and frog species in tropical soundscape recordings using a convolutional neural network

(2020) Jack LeBien et al.   Ecological Informatics

A new survey method using convolutional neural networks for automatic classification of bird calls

(2020) Yuko Maegawa et al.   Ecological Informatics

Low-Cost Distributed Acoustic Sensor Network for Real-Time Urban Sound Monitoring

(2020) Ester Vidaña-Vila et al.   Electronics

DeepSqueak: a deep learning-based system for detection and analysis of ultrasonic vocalizations

(2019) Kevin R. Coffey et al.   NEUROPSYCHOPHARMACOLOGY

Deploying Acoustic Detection Algorithms on Low-Cost, Open-Source Acoustic Sensors for Environmental Monitoring

(2019) Peter Prince et al.   SENSORS

Deep convolutional network for animal sound classification and source attribution using dual audio recordings

(2019) Tuomas Oikarinen et al.   JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA

Pre-processing spectrogram parameters improve the accuracy of bioacoustic classification using convolutional neural networks

(2019) Elly C. Knight et al.   BIOACOUSTICS-THE INTERNATIONAL JOURNAL OF ANIMAL SOUND AND ITS RECORDING

Automatic acoustic identification of individuals in multiple species: improving identification across recording conditions

(2019) Dan Stowell et al.   Journal of the Royal Society Interface

Bird Species Recognition Using Unsupervised Modeling of Individual Vocalization Elements

(2019) Peter Jancovic et al.   IEEE-ACM Transactions on Audio Speech and Language Processing

Whistle detection and classification for whales based on convolutional neural networks

(2019) Jia-jia Jiang et al.   APPLIED ACOUSTICS

The Necessity, Promise and Challenge of Automated Biodiversity Surveys

(2019) Justin Kitzes et al.   ENVIRONMENTAL CONSERVATION

Deep metric learning for bioacoustic classification: Overcoming training data scarcity using dynamic triplet loss

(2019) Anshul Thakur et al.   JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA

Measuring individual identity information in animal signals: Overview and performance of available identity metrics

(2019) Pavel Linhart et al.   Methods in Ecology and Evolution

ORCA-SPOT: An Automatic Killer Whale Sound Detection Toolkit Using Deep Learning

(2019) Christian Bergler et al.   Scientific Reports

Sound Event Detection in the DCASE 2017 Challenge

(2019) Annamaria Mesaros et al.   IEEE-ACM Transactions on Audio Speech and Language Processing

Is the insect apocalypse upon us? How to find out

(2019) Graham A. Montgomery et al.   BIOLOGICAL CONSERVATION

Automatic standardized processing and identification of tropical bat calls using deep learning approaches

(2019) Xing Chen et al.   BIOLOGICAL CONSERVATION

Robust sound event detection in bioacoustic sensor networks

(2019) Vincent Lostanlen et al.   PLoS One

Learning Time Series Associated Event Sequences With Recurrent Point Process Networks

(2019) Shuai Xiao et al.   IEEE Transactions on Neural Networks and Learning Systems

A deafening silence: a lack of data and reproducibility in published bioacoustics research?

(2019) Ed Baker et al.   Biodiversity Data Journal

Using visualization and machine learning methods to monitor low detectability species—The least bittern as a case study

(2019) Elizabeth Znidersic et al.   Ecological Informatics

Bird species identification via transfer learning from music genres

(2018) Stavros Ntalampiras   Ecological Informatics

Freshwater ecoacoustics as a tool for continuous ecosystem monitoring

(2018) Simon Linke et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Revealing the ecological content of long-duration audio-recordings of the environment through clustering and visualisation

(2018) Yvonne F. Phillips et al.   PLoS One

AudioMoth: Evaluation of a smart open acoustic device for monitoring biodiversity and the environment

(2018) Andrew P. Hill et al.   Methods in Ecology and Evolution

Active learning for classifying long-duration audio recordings of the environment

(2018) Mahnoosh Kholghi et al.   Methods in Ecology and Evolution

Bat detective—Deep learning tools for bat acoustic signal detection

(2018) Oisin Mac Aodha et al.   PLoS Computational Biology

Automatic classification of grouper species by their sounds using deep neural networks

(2018) Ali K. Ibrahim et al.   JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA

Bioacoustic detection with wavelet-conditioned convolutional neural networks

(2018) Ivan Kiskin et al.   NEURAL COMPUTING & APPLICATIONS

Deep Learning for Audio Event Detection and Tagging on Low-Resource Datasets

(2018) Veronica Morfi et al.   Applied Sciences-Basel

Automatic acoustic detection of birds through deep learning: The first Bird Audio Detection challenge

(2018) Dan Stowell et al.   Methods in Ecology and Evolution

CityNet-Deep learning tools for urban ecoacoustic assessment

(2018) Alison J. Fairbrass et al.   Methods in Ecology and Evolution

Organizing metadata from passive acoustic localizations of marine animals

(2017) Marie A. Roch et al.   JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA

Active learning for bird sound classification via a kernel-based extreme learning machine

(2017) Kun Qian et al.   JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA

Recommendations for acoustic recognizer performance assessment with application to five common automated signal recognition programs

(2017) Elly C. Knight et al.   Avian Conservation and Ecology

Rules and mechanisms for efficient two-stage learning in neural circuits

(2017) Tiberiu Teşileanu et al.   eLife

Modified DCTNet for audio signals classification

(2016) Yin Xian et al.   JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA

Detailed temporal structure of communication networks in groups of songbirds

(2016) Dan Stowell et al.   Journal of the Royal Society Interface

Automatic Recognition of Element Classes and Boundaries in the Birdsong with Variable Sequences

(2016) Takuya Koumura et al.   PLoS One

Statistics of natural reverberation enable perceptual separation of sound and space

(2016) James Traer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metrics for Polyphonic Sound Event Detection

(2016) Annamaria Mesaros et al.   Applied Sciences-Basel

Automatic recognition of bird individuals on an open set using as-is recordings

(2015) Ladislav Ptacek et al.   BIOACOUSTICS-THE INTERNATIONAL JOURNAL OF ANIMAL SOUND AND ITS RECORDING

Deep learning

(2015) Yann LeCun et al.   NATURE

Acoustic sequences in non-human animals: a tutorial review and prospectus

(2014) Arik Kershenbaum et al.   BIOLOGICAL REVIEWS

Species traits explain variation in detectability of UK birds

(2014) Alison Johnston et al.   BIRD STUDY

A general framework for animal density estimation from acoustic detections across a fixed microphone array

(2014) Ben C. Stevenson et al.   Methods in Ecology and Evolution

A toolbox for animal call recognition

(2012) Michael Towsey et al.   BIOACOUSTICS-THE INTERNATIONAL JOURNAL OF ANIMAL SOUND AND ITS RECORDING

Estimating animal population density using passive acoustics

(2012) Tiago A. Marques et al.   BIOLOGICAL REVIEWS

The emerging significance of bioacoustics in animal species conservation

(2010) Paola Laiolo   BIOLOGICAL CONSERVATION

Microhabitat selection in an assemblage of crickets (Orthoptera: Ensifera) of a tropical evergreen forest in Southern India

(2010) MANJARI JAIN et al.   Insect Conservation and Diversity

Acoustic censusing using automatic vocalization classification and identity recognition

(2010) Kuntoro Adi et al.   JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA

Mate recognition by female zebra finch: Analysis of individuality in male call and first investigations on female decoding process

(2007) Clémentine Vignal et al.   BEHAVIOURAL PROCESSES