标题
Transposable elements in plants: Recent advancements, tools and prospects
作者
关键词
-
出版物
PLANT MOLECULAR BIOLOGY REPORTER
Volume -, Issue -, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2022-05-12
DOI
10.1007/s11105-022-01342-w
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Taming transposable elements in vertebrates: from epigenetic silencing to domestication
- (2022) Miguel Vasconcelos Almeida et al. TRENDS IN GENETICS
- How Stress Facilitates Phenotypic Innovation Through Epigenetic Diversity
- (2021) Thanvi Srikant et al. Frontiers in Plant Science
- Transposable Elements and Stress in Vertebrates: An Overview
- (2021) Anna Maria Pappalardo et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Which factors contribute most to genome size variation within angiosperms?
- (2021) Dandan Wang et al. Ecology and Evolution
- Contemporary Transposon Tools: A Review and Guide through Mechanisms and Applications of Sleeping Beauty, piggyBac and Tol2 for Genome Engineering
- (2021) Nicolás Sandoval-Villegas et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Transposon-induced inversions activate gene expression in the maize pericarp
- (2021) Sharu Paul Sharma et al. GENETICS
- Building a cluster of NLR genes conferring resistance to pests and pathogens: the story of the Vat gene cluster in cucurbits
- (2021) Véronique Chovelon et al. Horticulture Research
- Epigenome plasticity in plants
- (2021) James P. B. Lloyd et al. NATURE REVIEWS GENETICS
- Genomic impact of stress-induced transposable element mobility in Arabidopsis
- (2021) David Roquis et al. NUCLEIC ACIDS RESEARCH
- DNA transposons mediate duplications via transposition-independent and -dependent mechanisms in metazoans
- (2021) Shengjun Tan et al. Nature Communications
- A population-level invasion by transposable elements triggers genome expansion in a fungal pathogen
- (2021) Ursula Oggenfuss et al. eLife
- Dynamics of DNA Methylation and Its Functions in Plant Growth and Development
- (2021) Suresh Kumar et al. Frontiers in Plant Science
- Applications of piggyBac Transposons for Genome Manipulation in Stem Cells
- (2021) Yi Sun et al. Stem Cells International
- Suggested Absence of Horizontal Transfer of Retrotransposons between Humans and Domestic Mammal Species
- (2021) Nicole M. Wanner et al. Genes
- Comparative analysis of transposable elements provides insights into genome evolution in the genus Camelus
- (2021) Mohanad A. Ibrahim et al. BMC GENOMICS
- Long terminal repeats (LTR) and transcription factors regulate PHRE1 and PHRE2 activity in Moso bamboo under heat stress
- (2021) Pradeep K. Papolu et al. BMC PLANT BIOLOGY
- The important contribution of transposable elements to phenotypic variation and evolution
- (2021) Nathan S. Catlin et al. CURRENT OPINION IN PLANT BIOLOGY
- Non-Coding RNAs in Response to Drought Stress
- (2021) Temesgen Assefa Gelaw et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Horizontal Transfer of LTR Retrotransposons Contributes to the Genome Diversity of Vitis
- (2021) Minkyu Park et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- The Dynamism of Transposon Methylation for Plant Development and Stress Adaptation
- (2021) Muthusamy Ramakrishnan et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Dual detection of chromatin accessibility and DNA methylation using ATAC-Me
- (2021) Lindsey N. Guerin et al. Nature Protocols
- The genomic ecosystem of transposable elements in maize
- (2021) Michelle C. Stitzer et al. PLoS Genetics
- Taming, Domestication and Exaptation: Trajectories of Transposable Elements in Genomes
- (2021) Pierre Capy Cells
- Emerging Roles of Repetitive and Repeat-Containing RNA in Nuclear and Chromatin Organization and Gene Expression
- (2021) Giuseppe Trigiante et al. Frontiers in Cell and Developmental Biology
- Conserved chromosomal functions of RNA interference
- (2020) Michael J. Gutbrod et al. NATURE REVIEWS GENETICS
- Transposable elements employ distinct integration strategies with respect to transcriptional landscapes in eukaryotic genomes
- (2020) Xinyan Zhang et al. NUCLEIC ACIDS RESEARCH
- RTRIP: a comprehensive profile of transposon insertion polymorphisms in rice
- (2020) Zhen Liu et al. PLANT BIOTECHNOLOGY JOURNAL
- RepeatModeler2 for automated genomic discovery of transposable element families
- (2020) Jullien M. Flynn et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Additional ORFs in Plant LTR-Retrotransposons
- (2020) Carlos M. Vicient et al. Frontiers in Plant Science
- Comparing the utility of in vivo transposon mutagenesis approaches in yeast species to infer gene essentiality
- (2020) Anton Levitan et al. CURRENT GENETICS
- A decade of advances in transposon-insertion sequencing
- (2020) Amy K. Cain et al. NATURE REVIEWS GENETICS
- Patterns and impacts of nonvertical evolution in eukaryotes: a paradigm shift
- (2020) Toni Gabaldón ANNALS OF THE NEW YORK ACADEMY OF SCIENCES
- Long non-coding RNAs and transposable elements: A functional relationship
- (2020) Victoire Fort et al. BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH
- Gene regulation by long non-coding RNAs and its biological functions
- (2020) Luisa Statello et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Diversity and evolution of the transposable element repertoire in arthropods with particular reference to insects
- (2019) Malte Petersen et al. BMC EVOLUTIONARY BIOLOGY
- Comparative analysis of miniature inverted–repeat transposable elements (MITEs) and long terminal repeat (LTR) retrotransposons in six Citrus species
- (2019) Yan Liu et al. BMC PLANT BIOLOGY
- The role of transposable elements and DNA damage repair mechanisms in gene duplications and gene fusions in plant genomes
- (2019) Ksenia V Krasileva CURRENT OPINION IN PLANT BIOLOGY
- Helitron distribution in Brassicaceae and whole Genome Helitron density as a character for distinguishing plant species
- (2019) Kaining Hu et al. BMC BIOINFORMATICS
- Transposition favors the generation of large effect mutations that may facilitate rapid adaption
- (2019) Leandro Quadrana et al. Nature Communications
- On the Population Dynamics of Junk: A Review on the Population Genomics of Transposable Elements
- (2019) Yann Bourgeois et al. Genes
- Transposable Elements and Their Epigenetic Regulation in Mental Disorders: Current Evidence in the Field
- (2019) Błażej Misiak et al. Frontiers in Genetics
- Affinities of Terminal Inverted Repeats to DNA Binding Domain of Transposase Affect the Transposition Activity of Bamboo Ppmar2 Mariner-Like Element
- (2019) Muthusamy Ramakrishnan et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Retrotransposons in Plant Genomes: Structure, Identification, and Classification through Bioinformatics and Machine Learning
- (2019) Simon Orozco-Arias et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Nuclear export signal (NES) of transposases affects the transposition activity of mariner-like elements Ppmar1 and Ppmar2 of moso bamboo
- (2019) Muthusamy Ramakrishnan et al. Mobile DNA
- Draft genome sequence of Solanum aethiopicum provides insights into disease resistance, drought tolerance, and the evolution of the genome
- (2019) Bo Song et al. GigaScience
- Roles of Transposable Elements in the Different Layers of Gene Expression Regulation
- (2019) Denise Drongitis et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Nested plant LTR retrotransposons target specific regions of other elements, while all LTR retrotransposons often target palindromes and nucleosome-occupied regions: in silico study
- (2019) Pavel Jedlicka et al. Mobile DNA
- Mobilization of retrotransposons as a cause of chromosomal diversification and rapid speciation: the case for the Antarctic teleost genus Trematomus
- (2018) J. Auvinet et al. BMC GENOMICS
- Transposable elements: genome innovation, chromosome diversity, and centromere conflict
- (2018) Savannah J. Klein et al. CHROMOSOME RESEARCH
- Contribution of transposable elements in the plant's genome
- (2018) Mahbod Sahebi et al. GENE
- Dynamics and function of DNA methylation in plants
- (2018) Huiming Zhang et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- A machine learning based framework to identify and classify long terminal repeat retrotransposons
- (2018) Leander Schietgat et al. PLoS Computational Biology
- In silico Phylogenetic Analysis of hAT Transposable Elements in Plants
- (2018) Gökhan Karakülah et al. Genes
- Diversity, distribution and dynamics of full-length Copia and Gypsy LTR retroelements in Solanum lycopersicum
- (2017) Rosalía Cristina Paz et al. GENETICA
- PlanTEnrichment: A tool for enrichment analysis of transposable elements in plants
- (2017) Gökhan Karakülah et al. GENOMICS
- Horizontal Transfer of Non-LTR Retrotransposons from Arthropods to Flowering Plants
- (2017) Dongying Gao et al. MOLECULAR BIOLOGY AND EVOLUTION
- DNA methylation of retrotransposons, DNA transposons and genes in sugar beet (Beta vulgaris L.)
- (2017) Falk Zakrzewski et al. PLANT JOURNAL
- Massive horizontal transfer of transposable elements in insects
- (2017) Jean Peccoud et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Transposons As Tools for Functional Genomics in Vertebrate Models
- (2017) Koichi Kawakami et al. TRENDS IN GENETICS
- Himar1 Transposon for Efficient Random Mutagenesis in Aggregatibacter actinomycetemcomitans
- (2017) Qinfeng Ding et al. Frontiers in Microbiology
- Retroviral vectors and transposons for stable gene therapy: advances, current challenges and perspectives
- (2016) José Eduardo Vargas et al. Journal of Translational Medicine
- Methods for accurate quantification of LTR-retrotransposon copy number using short-read sequence data: a case study in Sorghum
- (2016) Dhanushya Ramachandran et al. MOLECULAR GENETICS AND GENOMICS
- Regulatory activities of transposable elements: from conflicts to benefits
- (2016) Edward B. Chuong et al. NATURE REVIEWS GENETICS
- A Helitron transposon reconstructed from bats reveals a novel mechanism of genome shuffling in eukaryotes
- (2016) Ivana Grabundzija et al. Nature Communications
- Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale
- (2015) Hani Z. Girgis BMC BIOINFORMATICS
- Satellite DNA in Plants: More than Just Rubbish
- (2015) Manuel A. Garrido-Ramos CYTOGENETIC AND GENOME RESEARCH
- The Contributions of Transposable Elements to the Structure, Function, and Evolution of Plant Genomes
- (2014) Jeffrey L. Bennetzen et al. Annual Review of Plant Biology
- Bidirectional promoters are the major source of gene activation-associated non-coding RNAs in mammals
- (2014) Masahiro Uesaka et al. BMC GENOMICS
- An atlas of active enhancers across human cell types and tissues
- (2014) Robin Andersson et al. NATURE
- Dicer-microRNA-Myc circuit promotes transcription of hundreds of long noncoding RNAs
- (2014) Grace X Y Zheng et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- AntisenseCOOLAIRmediates the coordinated switching of chromatin states atFLCduring vernalization
- (2014) Tibor Csorba et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The repetitive component of the sunflower genome as shown by different procedures for assembling next generation sequencing reads
- (2013) Lucia Natali et al. BMC GENOMICS
- Transposable Elements: Powerful Contributors to Angiosperm Evolution and Diversity
- (2013) Keith R. Oliver et al. Genome Biology and Evolution
- TED, an Autonomous and Rare Maize Transposon of the Mutator Superfamily with a High Gametophytic Excision Frequency
- (2013) Y. Li et al. PLANT CELL
- TARE1, a Mutated Copia-Like LTR Retrotransposon Followed by Recent Massive Amplification in Tomato
- (2013) Hao Yin et al. PLoS One
- Conserved structure and inferred evolutionary history of long terminal repeats (LTRs)
- (2013) Farid Benachenhou et al. Mobile DNA
- Active Transposition in Genomes
- (2012) Cheng Ran Lisa Huang et al. Annual Review of Genetics
- Retrotransposons
- (2012) David J. Finnegan CURRENT BIOLOGY
- Retrotransposons Control Fruit-Specific, Cold-Dependent Accumulation of Anthocyanins in Blood Oranges
- (2012) E. Butelli et al. PLANT CELL
- Tnt1 Retrotransposon Mutagenesis: A Tool for Soybean Functional Genomics
- (2012) Y. Cui et al. PLANT PHYSIOLOGY
- A Gene Family Derived from Transposable Elements during Early Angiosperm Evolution Has Reproductive Fitness Benefits in Arabidopsis thaliana
- (2012) Zoé Joly-Lopez et al. PLoS Genetics
- An automated homology-based approach for identifying transposable elements
- (2011) Ryan C Kennedy et al. BMC BIOINFORMATICS
- Genome-wide target profiling of piggyBac and Tol2 in HEK 293: pros and cons for gene discovery and gene therapy
- (2011) Yaa-Jyuhn J Meir et al. BMC BIOTECHNOLOGY
- The Activator/Dissociation Transposable Elements Comprise a Two-Component Gene Regulatory Switch That Controls Endogenous Gene Expression in Maize
- (2011) L. Bai et al. GENETICS
- Pack-Mutator-like transposable elements (Pack-MULEs) induce directional modification of genes through biased insertion and DNA acquisition
- (2011) N. Jiang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The expanding universe of transposon technologies for gene and cell engineering
- (2011) Zoltán Ivics et al. Mobile DNA
- DNA Transposons: Nature and Applications in Genomics
- (2010) Martin Munoz-Lopez et al. CURRENT GENOMICS
- Transposase–Transposase Interactions in MOS1 Complexes: A Biochemical Approach
- (2010) Guillaume Carpentier et al. JOURNAL OF MOLECULAR BIOLOGY
- Non-long terminal repeat (non-LTR) retrotransposons: mechanisms, recent developments, and unanswered questions
- (2010) Jeffrey S Han Mobile DNA
- TEclass--a tool for automated classification of unknown eukaryotic transposable elements
- (2009) G. Abrusan et al. BIOINFORMATICS
- Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
- (2009) Mitchell Guttman et al. NATURE
- A Retrotransposon-Mediated Gene Duplication Underlies Morphological Variation of Tomato Fruit
- (2008) H. Xiao et al. SCIENCE
- Divergent Transcription from Active Promoters
- (2008) Amy C. Seila et al. SCIENCE
- Nascent RNA Sequencing Reveals Widespread Pausing and Divergent Initiation at Human Promoters
- (2008) Leighton J. Core et al. SCIENCE
Create your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create NowBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started